can you add it to bioconda? thanks!

Question

can you add it to bioconda? thanks!

Closed this issue 3 years ago · 7 comments

Answer 1 · 2020-12-16T17:41:32.000Z

Hi,
it wasn't planned initially but it might be a good idea. I'll let this issue open, to inform you if we decide to do it.

Answer 2 · 2020-12-16T17:50:49.000Z

thanks Benjamin! That will be most helpful to researchers with beginner experience with coding and software installation! I can see it will increase use of your program! I look forward to try it! Best, Antonio

…

On Wed, Dec 16, 2020 at 12:41 PM Benjamin Istace ***@***.***> wrote: Hi, it wasn't planned initially but it might be a good idea. I'll let this issue open, to inform you if we decide to do it. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#1 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ALIJRA67W2XKP35Q7GMFL4DSVDWNXANCNFSM4U6CS2KQ> .

-- J. Antonio Baeza Associate Professor Department of Biological Sciences, Clemson University South Carolina, USA & Research Associate Smithsonian Marine Station at Fort Pierce, Florida, USA & Adjunct Faculty Universidad Catolica del Norte, Coquimbo, Chile Email: baeza.antonio@google.com & jbaezam@clemson.edu Website: http://baezaantonio.wix.com/baezalabclemson Website (CI-team): https://baezaantonio.wixsite.com/clemsonmitogenomics Website ResearchGate: https://www.researchgate.net/profile/J_Baeza/ Website SemanticScholar: https://www.semanticscholar.org/author/Juan-Antonio-Baeza/144723920

Answer 3 · 2021-02-10T14:25:41.000Z

Hi,

with the 1.0 version, we released Hapo-G to Anaconda. If you're still interested, could you please try and run:

conda create -n hapog -y python==3.6
conda activate hapog
conda install -c lbgb hapog
hapog.py -h

Answer 4 · 2021-02-10T14:30:04.000Z

thanks Ben! I will give it a try in the near future! Best, Antonio

…

On Wed, Feb 10, 2021 at 9:26 AM Benjamin Istace ***@***.***> wrote: Hi, with the 1.0 version, we released Hapo-G to Anaconda. If you're still interested, could you please try and run: conda create -n hapog -y python==3.6 conda activate hapog conda install -c lbgb hapog hapog.py -h — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#1 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ALIJRA22WG3J76OVIPNDI3TS6KJPXANCNFSM4U6CS2KQ> .

-- J. Antonio Baeza Associate Professor Department of Biological Sciences, Clemson University South Carolina, USA & Research Associate Smithsonian Marine Station at Fort Pierce, Florida, USA & Adjunct Faculty Universidad Catolica del Norte, Coquimbo, Chile Email: baeza.antonio@google.com & jbaezam@clemson.edu Website: http://baezaantonio.wix.com/baezalabclemson Website (CI-team): https://baezaantonio.wixsite.com/clemsonmitogenomics Website ResearchGate: https://www.researchgate.net/profile/J_Baeza/ Website SemanticScholar: https://www.semanticscholar.org/author/Juan-Antonio-Baeza/144723920

Answer 5 · 2021-02-22T15:42:21.000Z

Just on my side, I gave it whirl andI got the same issue as previously in #3

Answer 6 · 2021-03-05T07:13:15.000Z

Hi @SAMtoBAM,

we're very grateful for your feedback, it is very hard for us to fix this issue as we don't experience it. We've made modifications to the conda package, could you please try the following commands?

# Remove previous HAPO-G env
conda remove --name hapog --all

conda create -n hapog
conda activate hapog
conda install -c lbgb_cea hapog

Answer 7 · 2021-04-27T08:23:11.000Z

Hello @bistace

Conda package is working well for me. Thanks for the release !