institut-de-genomique/HAPO-G

Issues

• Phased assembly polishing

  #39 opened a month ago by Karenmagh
  0

• High RAM consumption in plant genome

  #38 opened 3 months ago by enriquepola1996
  10

• Plant genome

  #37 opened 3 months ago by enriquepola1996
  7

• hapog introduce non-codon character in the polished sequence

  #26 opened 5 months ago by zmz1988
  13

• Memory issue

  #29 opened 10 months ago by Yutang-ETH
  5

• Error with --threads 1 - persisting

  #34 opened 10 months ago by wm75
  4

• Does HAPO-G correct ambiguous bases in fasta

  #33 opened a year ago by bsb2014
  0

• long and short reads

  #32 opened a year ago by bsb2014
  1

• TypeError issue

  #31 opened a year ago by aldendirks
  12

• Explanation of hapog.changes

  #30 opened a year ago by bsb2014
  1

• Question: how about polishing a phased diploid genome assembly?

  #28 opened a year ago by Yutang-ETH
  2

• Question: how HAPO-G handles N in reads?

  #27 opened a year ago by Yutang-ETH
  4

• ModuleNotFoundError

  #20 opened a year ago by mergi-2674
  1

• ERRORs when using newest version on conda

  #25 opened a year ago by xiekunwhy
  1

• How do I get a vcf file?

  #24 opened 2 years ago by th2ch-g
  2

• PackageNotFoundError

  #23 opened 2 years ago by GuillaumeHolley
  4

• Minimum coverage for correction?

  #22 opened 2 years ago by Andy-B-123
  2

• Error with --threads 1

  #21 opened 2 years ago by abretaud
  1

• exit code: -6

  #9 opened 2 years ago by fergsc
  14

• UnicodeDecodeError: 'utf-8' codec can't decode byte 0xb1

  #17 opened 2 years ago by LynnLy
  6

• Polish before or after Redundans

  #19 opened 2 years ago by Ben7124
  1

• Conda install fails

  #18 opened 2 years ago by Ben7124
  3

• Just to confirm whether I get the right output files

  #13 opened 2 years ago by zmz1988
  17

• How many times to polish an assembly

  #14 opened 2 years ago by romseg
  4

• Do you recommend to polish hifi assemble results (like hifiasm or hicanu results) ?

  #15 opened 2 years ago by xiekunwhy
  2

• output, adding sequences from reads, and ratios?

  #16 opened 2 years ago by cistarsa
  4

• error using the -b option

  #12 opened 3 years ago by chklopp
  4

• Compiling Error

  #10 opened 3 years ago by dslater82
  2

• long read vs short read polishing

  #11 opened 3 years ago by JonEilers
  0

• conda running code

  #7 opened 3 years ago by desmodus1984
  5

• ERROR: Hapo-G didn't finish successfully, exit code: -9

  #5 opened 3 years ago by Mondlii
  1

• Error in bwa mem and samtools sort, return code: 256

  #6 opened 3 years ago by myco-bradshaw
  3

• ERROR: Hapo-G didn't finish successfully, exit code: -8

  #8 opened 3 years ago by JonEilers
  9

• can you add it to bioconda? thanks!

  #1 opened 3 years ago by AntonioBaeza
  7

• Docs question: what does the -u option do?

  #4 opened 4 years ago by cabbagesofdoom
  3

• ERROR: Hapo-G didn't finish successfully, exit code: 127

  #3 opened 4 years ago by SAMtoBAM
  9

• It is possible to start from already produced BAM files?

  #2 opened 4 years ago by andreaswallberg
  4