aldendirks
Mycologist interested in evolution of early fungal clades; alphataxonomy of corticioid fungi; and fungal biodiversity and conservation in the state of Michigan.
University of MichiganAnn Arbor, MI
Pinned Repositories
amf_metabarcoding
Public repository of data and analyses from Dirks and Jackson (2020), "Community structure of Arbuscular Mycorrhizal Fungi in Soils of Switchgrass Harvested for Bioenergy", Applied and Environmental Microbiology 86 (19)
crustfungi
discinaceae_phylogenomics
Repository for Dirks et al. (2024) "Phylogenomic insights into the taxonomy, ecology, and mating systems of the lorchel family Discinaceae (Pezizales, Ascomycota)"
Extract-ITS-sequences-from-a-fungal-genome
interproscan
Genome-scale protein function classification
iqtree2
NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org
Lab-Code-and-Hacks
This is the site where we store shared code for the Michigan Mycology Lab
funannotate
Eukaryotic Genome Annotation Pipeline
ASTRAL
Accurate Species TRee ALgorithm
HGTphyloDetect
HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.
aldendirks's Repositories
aldendirks/amf_metabarcoding
Public repository of data and analyses from Dirks and Jackson (2020), "Community structure of Arbuscular Mycorrhizal Fungi in Soils of Switchgrass Harvested for Bioenergy", Applied and Environmental Microbiology 86 (19)
aldendirks/discinaceae_phylogenomics
Repository for Dirks et al. (2024) "Phylogenomic insights into the taxonomy, ecology, and mating systems of the lorchel family Discinaceae (Pezizales, Ascomycota)"
aldendirks/crustfungi
aldendirks/Extract-ITS-sequences-from-a-fungal-genome