nextgenusfs/funannotate

Issues

• Funannotate compare

  #1067 opened 19 days ago by Niohuruzh
  0

• Evidence modeler has failed, exiting

  #1042 opened 4 months ago by genbuf
  3

• installing databases failed

  #1066 opened a month ago by jacob-israel
  3

• cannot install funannotate, Executing transaction allthe time.

  #1065 opened a month ago by winteraatt
  0

• funannotate-predict.py: error: unrecognized arguments: --stopCodonExcludedFromCDS=False

  #1064 opened a month ago by wangpeng-design
  3

• Unique proteins from Funannotate compare

  #1063 opened a month ago by manjumoorthy95
  0

• Funannotate Installation : How to configure funannotate app find the Trimmomatic program?

  #1061 opened a month ago by jacob-israel
  5

• funannotate compare fails at diamond

  #1062 opened a month ago by jsimba-99
  2

• snap-training generation assumes input genome FASTA is sorted

  #1060 opened a month ago by hyphaltip
  2

• Funannotate train failing when using mysql due to socket error

  #1056 opened 3 months ago by monkfromouterspace
  2

• URL update needed for the latest MEROPs database file

  #1054 opened 3 months ago by calizilla
  5

• Setup of funannotate databases fails

  #1058 opened 2 months ago by ekg123
  2

• funannotate annotate uses $FUNANNOTATE_DB over -d /path/to/databases for go.obo

  #1059 opened 2 months ago by mjacksonhill
  2

• How to fix a local variable in gff3

  #1044 opened 4 months ago by yumi-nakadera
  4

• Issues with multiple transcripts: MEROPs, BUSCO, PFAM and dbCAN/CAZyme annotations missing for T2 transcripts from final annotation file

  #1055 opened 3 months ago by calizilla
  0

• Iprscan and annotate do not recognize predicted output folder

  #1049 opened 3 months ago by Okompath
  0

• Augustus installation error ( When I use the make command it gives this error)

  #1053 opened 3 months ago by pvshekar
  0

• annotations.antismash.txt file empty using Antismash 7.1 online

  #1051 opened 3 months ago by GabrieleRigano99
  1

• Parsing uniprot blast hits

  #1052 opened 3 months ago by SnuniKVC
  0

• linux/arm64 docker image

  #1050 opened 3 months ago by JLSteenwyk
  2

• funannotate test failing at predict step

  #1047 opened 4 months ago by pwkooij
  6

• funannotate remote does not recognise predict_results folder

  #1043 opened 4 months ago by ydanylko
  7

• genemark probuild takes too long

  #1048 opened 4 months ago by sqwwww
  0

• question about the busco version in funannotate

  #1046 opened 4 months ago by dingxm
  0

• funannotate predict works on test data but not on my real data

  #1045 opened 4 months ago by Faheema-khan
  0

• Protein FASTA file not found, exiting - annotate_misc genome.protein.fa has no data

  #1019 opened 4 months ago by stachyris
  2

• Funannotate compare

  #1040 opened 5 months ago by danielabermeo8
  1

• Annotate command drops AttributeError: 'SimpleLocation' object has no attribute 'nofuzzy_start' error

  #1032 opened 5 months ago by ufaroooq
  3

• TypeError: '>' not supported between instances of 'NoneType' and 'int'

  #1031 opened 5 months ago by ad010902
  2

• When running funannotate compare, comparison of 2 species succeeds but comparison of 3 species fails

  #1041 opened 4 months ago by liuyca1
  0

• CMD ERROR: diamond makedb --in /tmp/augustus.training.proteins.fa --db /tmp/aug_training.dmnd

  #1039 opened 5 months ago by dingcaojin
  1

• EC_number, eggnog and COG terms not in annotate_results/annotations.txt

  #1026 opened 6 months ago by slsy9965
  1

• GENMARK

  #1029 opened 5 months ago by ad010902
  2

• isoforms in gff3

  #1036 opened 5 months ago by Nitin123-4
  1

• Run InterProScan with funannotate-docker

  #1037 opened 5 months ago by hanhan124
  0

• How to run funannotate setup local，configure Funannotate to use the locally downloaded database files instead of re-downloading them?

  #1035 opened 5 months ago by zengqd
  0

• How to check the full-length genes from the final annotation.

  #1034 opened 5 months ago by Nitin123-4
  0

• funannotate update ERROR

  #1033 opened 5 months ago by ChuanzhengWei
  0

• How can I include the contig from the mitochondrial genome?

  #1030 opened 5 months ago by Antonio-Sanpedro
  0

• Database is not properly configured, re-run funannotate setup, busco_seed_species

  #1028 opened 5 months ago by ad010902
  1

• Funannotate sort (Version 1.8.17): error while sorting assembly/contigs

  #1027 opened 5 months ago by jmartinsjrbr
  0

• funannotate update, kallisto error

  #1025 opened 6 months ago by schraderL
  1

• Signalp v4.1 Installation

  #1024 opened 6 months ago by mojiefei
  0

• Predicting genes for fungal metagenome assembly sequences

  #1022 opened 6 months ago by mojiefei
  0

• diamond Once the parameter, subject-cover and query-cover is used, an error segment (core dumped) is reported.

  #1020 opened 6 months ago by zhixia-song
  1

• How to solve the issule about "Found 1 bad contigs, where alphabet is less than 4 [this should not happen]"

  #1021 opened 6 months ago by weiguanyue
  0

• ERROR: gmes_petap.pl not installed

  #1017 opened 6 months ago by mojiefei
  6

• ERROR: gmes_petap.pl not installed ERROR: signalp not installed when they are

  #1018 opened 6 months ago by joana-morais
  1

• KeyError: 'FUN_000001' in funannotate annotate

  #1016 opened 6 months ago by bpeacock44
  9

• iprscan.xml related erro

  #1015 opened 6 months ago by Panda-smile
  2