Integrative bioinformatics @ NCL
Code repository for research work of the integrative bioinformatics research team in ICOS at Newcastle University
5th floor, Urban Sciences Building, Newcastle University
Pinned Repositories
BiomationScripterLib
A Python library to assist with scripting bio-automation protocols
ensep
Repository of code related to EnSeP, the enzyme search platform.
genet2
Web Application for the integration, enhancement and representation of Synthetic Biology centric data.
net_vis_syn_bio
Network Visualisation Synthetic Biology
ontology_server
Language Server for Data Mining and Natural Language around SBOL and Related Ontologies/Terms.
Probablistic-Functional-Integrated-Networks
PhD Project
ro-crate-rs
A Rust library for defining RO-Crates (https://www.researchobject.org/ro-crate/1.1/) for research data.
seq-mdp
Solve the Maximum Diversity Problem for protein sequence sampling.
seq-sublight
Highlight subsets of protein sequences from a larger superset on a Sequence Similarity Network.
shortbol
ShortBOL - A abstract language implementing the SBOL Data Model.
Integrative bioinformatics @ NCL's Repositories
intbio-ncl/BiomationScripterLib
A Python library to assist with scripting bio-automation protocols
intbio-ncl/genet2
Web Application for the integration, enhancement and representation of Synthetic Biology centric data.
intbio-ncl/shortbol
ShortBOL - A abstract language implementing the SBOL Data Model.
intbio-ncl/net_vis_syn_bio
Network Visualisation Synthetic Biology
intbio-ncl/seq-mdp
Solve the Maximum Diversity Problem for protein sequence sampling.
intbio-ncl/ro-crate-rs
A Rust library for defining RO-Crates (https://www.researchobject.org/ro-crate/1.1/) for research data.
intbio-ncl/ClusterMerge
Merges a PFIN with the subgraph for PFIN extracted from RepotrialDB
intbio-ncl/csn_workflow
intbio-ncl/ensep
Repository of code related to EnSeP, the enzyme search platform.
intbio-ncl/ontology_server
Language Server for Data Mining and Natural Language around SBOL and Related Ontologies/Terms.
intbio-ncl/Probablistic-Functional-Integrated-Networks
PhD Project
intbio-ncl/ROTc
Recursive Orthogonal Threshold classifier.
intbio-ncl/sbol_graph_visualiser
A Tool to visualise SBOL in graphical views.
intbio-ncl/seq-sublight
Highlight subsets of protein sequences from a larger superset on a Sequence Similarity Network.
intbio-ncl/chimera_evolve
Design of CDS for 1+ organisms by optimisation of the Chimera Average Repetitive Substring (ARS) metric.
intbio-ncl/csc8221-synbioautomation
course scripts for synbio automation course
intbio-ncl/DNN_Carbapenem_Resistance
Prediction of future carbapanem resistance variants