integrativemodeling

Scripts, inputs, and outputs for integrative modeling using the IMP software.

Pinned Repositories

eif3
Data and scripts to model eIF3 from mass spec data
Language:Python1 17 01
hybrid_ms_method
Method for integrating MS data from the Robinson lab.
Language:Fortran3 5 03
nbspike
Integrative modeling of nanobody binding modes to the SARS-CoV-2 Spike protein
Language:PureBasic1 15 01
npc_slide_and_exchange
Language:Tcl1 17 00
nup82
Modeling of the Nup82 subcomplex of the Nuclear Pore Complex
Language:Python1 20 00
ORF2p
Language:Jupyter Notebook1 15 00
phoq
Multi-state modeling of the PhoQ two-component system
Language:Python1 17 00
PM_NPC_Assembly
Code for spatiotemporal modeling of the NPC Assembly Pathway
Language:Python0 15 00
sea
Modeling of the SEA complex
Language:HTML1 17 11
smc56_nse256
Integrative modeling of the Smc5/6-Nse2/5/6 complex using comparative modeling and chemical crosslinks.
Language:HTML1 16 00

integrativemodeling's Repositories

integrativemodeling/nbspike
Integrative modeling of nanobody binding modes to the SARS-CoV-2 Spike protein
Language:PureBasic1 15 01
integrativemodeling/nup82
Modeling of the Nup82 subcomplex of the Nuclear Pore Complex
Language:Python1 20 00
integrativemodeling/ORF2p
Language:Jupyter Notebook1 15 00
integrativemodeling/phoq
Multi-state modeling of the PhoQ two-component system
Language:Python1 17 00
integrativemodeling/smc56_nse256
Integrative modeling of the Smc5/6-Nse2/5/6 complex using comparative modeling and chemical crosslinks.
Language:HTML1 16 00
integrativemodeling/CSN2019
Structural dynamics of the human COP9 signalosome revealed by cross-linking mass spectrometry and integrative modeling
Language:Python0 16 01
integrativemodeling/ecm29
Regulation of 26S proteasome via interaction with Ecm29
Language:Python0 21 20
integrativemodeling/exocyst
Integrative Modeling of Yeast Exocyst Complex
Language:Python0 20 20
integrativemodeling/GLP1R-Gs
Language:Python01
integrativemodeling/gtuscSpc110
Integrative model of the γTuSC-Spc110 complex
Language:Python0 16 00
integrativemodeling/npc2018
Modeling of the yeast Nuclear Pore Complex
Language:Python0 16 00
integrativemodeling/NPC_TMDs
Language:Python0 15 00
integrativemodeling/nup133
Modeling of the Nup133 subunit of the Nuclear Pore Complex
Language:Python0 17 10
integrativemodeling/nup84
Modeling of the Nup84 subcomplex of the Nuclear Pore Complex
Language:Python0 23 51
integrativemodeling/pde6
Modeling of the phosphodiesterase (PDE6)
Language:Python00
integrativemodeling/Pks13
Language:Python0 15 00
integrativemodeling/PM_NPC_Assembly
Code for spatiotemporal modeling of the NPC Assembly Pathway
Language:Python0 15 00
integrativemodeling/pol_ii_g
Architecture of Pol II(G) and molecular mechanism of transcription regulation by Gdown1
Language:Python0 19 22
integrativemodeling/pom152
Molecular Architecture of the Major Membrane Ring Component of the Nuclear Pore Complex
Language:Python0 19 00
integrativemodeling/tfiih
Modeling of the TFIIH complex using chemical cross-links and electron microscopy (EM) density maps
Language:Python0 16 20
integrativemodeling/Complement
Human complement modeling
Language:Python9 0
integrativemodeling/exosome
Modeling exosome complexes from cross-link MS data
Language:Python5 41
integrativemodeling/IMP_BioSystem_Domain_Fly_Genome
Example of using IMP to model a region of the Fly genome https://integrativemodeling.org/systems/
Language:Python0 0
integrativemodeling/mediator
Modeling of the yeast Mediator complex
Language:Python6 6
integrativemodeling/Nef_CD4_AP2
Integrative structure of the Nef-CD4(CD)-AP2(Δμ2-CTD) complex
Language:Python16 01
integrativemodeling/NPC_3.0
Integrative structure determination of the yeast NPC
Language:Python17 2
integrativemodeling/NPC_Basket
Language:Python23 0
integrativemodeling/pemap
Integrative Structure Determination using data from point mutant epistatic miniarray profile
Language:Python17 0
integrativemodeling/saxsmerge_benchmark
Benchmark of the SAXS Merge method
Language:Python1
integrativemodeling/U2OS_cellmap_structures
Language:Python15 0