This application accepts cytoscape.js json markup and displays graphs. Designed to help visualise files generated by @nupurgunwant
Demo at http://www.intermine.org/cytoscape-graph-displayer
Python 3.2 and all the higher versions suggested
No dependency needed
- After cloning/downloading, open the directory
- Open the graph_scripts folder
- Run the python file according to your need
To make a graph to check the number of interMines(provided by user) each class covers:
import many_intm
many_intm.find_classes("flymine", "humanmine","mousemine","ratmine")
<add other interMines according to your need>
To make a graph to check if the classes of the given interMine are present in a given template or not:
import one_intm_one_temp
one_intm_one_temp.check_classes('flymine','Gene_RegionLocation')
<add other interMine/template according to your need>
To make a graph to check the number of templates(provided by user) each class covers in a given interMine:
import one_intm_many_temp as o
o.check_classes('flymine','Gene_RegionLocation','GOterm_GenesInsertions','AlleleClass_Allele')
<add other interMine/templates according to your need>
To make a graph to check the number of data items in each class for a given interMine:
import one_intm_data as o
o.find_classes('flymine')
<add other interMine according to your need>
All js/html/css assets in this folder can be served on a static server, such as apache or gh-pages. Cytoscape and jQuery are loaded via CDN, so no installation is required.
Entry points for a developer are the index.html file and script.js for interactive functionality.