iomega/ms2query

Issues

• Error running ms2query

  #254 opened 3 months ago by ShinyBasu
  3

• “feature_id” column empty

  #234 opened 5 months ago by montmasis
  4

• Indicate OSX M1 chip incompatability in installation workflow (until solved through MS2DeepScore 2.0)

  #235 opened 5 months ago by justinjjvanderhooft
  0

• Upgrade to new matchms release

  #199 opened 5 months ago by niekdejonge
  2

• Failure to grab compound name from metadata dictionary

  #249 opened 5 months ago by wjcranda
  10

• pip install ms2query failed (This error originates from a subprocess, and is likely not a problem with pip.)

  #239 opened 5 months ago by TOTOZAFY
  2

• Automatic zenodo upload failing

  #242 opened 5 months ago by niekdejonge
  1

• MS2Query version 0.3.2 library

  #247 opened 5 months ago by jamesjiadazhan
  1

• ImportError: cannot import name 'triu' from 'scipy.linalg'

  #245 opened 5 months ago by nici7
  6

• module 'matchms.filtering' has no attribute 'add_losses'

  #244 opened 5 months ago by jweinb
  9

• Version 1.5.0 assertation error if wrong ion mode

  #248 opened 5 months ago by wjcranda
  1

• No additional metadata information

  #241 opened 7 months ago by Dmente92
  1

• Add nearest neighbor search

  #240 opened 7 months ago by niekdejonge
  0

• Allow searching for library compounds without mass spectrum

  #236 opened 10 months ago by niekdejonge
  4

• Paralalize MS2Query

  #156 opened 2 years ago by niekdejonge
  4

• "Harmonizing annotations" degrades in peformance over time.

  #227 opened a year ago by mapio
  2

• Problem getting classifire classifications (very slow execution and large number of failures)

  #222 opened a year ago by mapio
  6

• Crash in `matchms` probably due to format change

  #214 opened a year ago by mapio
  8

• Metric name changed, warnings and errors looking for `val_loss`.

  #212 opened a year ago by mapio
  2

• Create your own library (without training new models) example does not work.

  #211 opened a year ago by mapio
  5

• Update the example data in `dummy_data`

  #210 opened a year ago by mapio
  2

• Crash in `matchms` probably due to format change

  #213 opened a year ago by mapio
  0

• ONNX issue

  #208 opened a year ago by eeko-kon
  4

• Add yml file

  #204 opened a year ago by niekdejonge
  0

• Feature_id flag in python

  #203 opened a year ago by eeko-kon
  6

• Make library creation more robust

  #202 opened a year ago by florian-huber
  1

• Check with newer MS2DeepScore models

  #200 opened a year ago by florian-huber
  1

• Training library (updated version)

  #196 opened a year ago by eeko-kon
  8

• Update ms2query cleaning to use matchms pipeline

  #197 opened a year ago by niekdejonge
  0

• Error in applying MS2Query

  #194 opened a year ago by anani-a-missinou
  9

• Split MS2Query in run and train

  #192 opened 2 years ago by niekdejonge
  0

• Store embeddings in different file format

  #191 opened 2 years ago by niekdejonge
  0

• Stream results MS2Query

  #155 opened 2 years ago by niekdejonge
  1

• Replace analog search return results table with return dataframe

  #185 opened 2 years ago by niekdejonge
  2

• Allow partial reuse of compound class annotations

  #188 opened 2 years ago by niekdejonge
  0

• make_adding_spectra_to_library_possible

  #167 opened 2 years ago by niekdejonge
  1

• MS2DeepScore

  #183 opened 2 years ago by eeko-kon
  3

• weighted spectrum is unknown to the model

  #182 opened 2 years ago by thierrynieus
  4

• urllib.error.URLError: <urlopen error [Errno 54] Connection reset by peer>

  #175 opened 2 years ago by eeko-kon
  1

• Make training random forest with feature names

  #160 opened 2 years ago by niekdejonge
  0

• Add dot product (cosine score) to the results

  #172 opened 2 years ago by niekdejonge
  1

• Memory foodprint creating large tanimoto score files

  #150 opened 2 years ago by niekdejonge
  12

• make command line runnable

  #158 opened 2 years ago by niekdejonge
  1

• Add required preprocessing to readme

  #162 opened 2 years ago by niekdejonge
  1

• Automatically split positive and negative mode query spectra

  #163 opened 2 years ago by niekdejonge
  1

• Allow different spellings of file types

  #164 opened 2 years ago by niekdejonge
  1

• split unit and integration tests

  #157 opened 2 years ago by niekdejonge
  0

• Create CleanSpectra class

  #153 opened 2 years ago by niekdejonge
  0

• Postive and Negative mode

  #145 opened 2 years ago by niekdejonge
  1

• install issue on mac M1 chip

  #147 opened 2 years ago by guikool
  2