Per-family embeddings and their Pfam labels can be downloaded from Zenodo 10.5281/zenodo.10091909.
Pfam 35 family-to-clan mapping can be downloaded from the Pfam FTP site (direct download link).
Embeddings, labels and Pfam-A clan descriptions should be located in the data/
directory.
ProtCNNSim_examples.ipynb
contains the code for calculating the scores and building the sensitivity curve.
All utilities needed for this are in utils.py
.