Pinned Repositories
aop_bmdt_nanocommons
aop_nm_grouping
bamtofastq
Converts bam or cram files to fastq format and does quality control.
conumee
conumee_2
deeplearning-biology
A list of deep learning implementations in biology
dnaalnqc
ICGC-ARGO workflow for DNA-Seq alignment QC
IntPROAST
A wrapper to the PROAST R package by RIVM http://www.rivm.nl/en/Documents_and_publications/Scientific/Models/PROAST
IsoXpressor_docker
plumbProast
irliampa's Repositories
irliampa/IsoXpressor_docker
irliampa/aop_bmdt_nanocommons
irliampa/aop_nm_grouping
irliampa/bamtofastq
Converts bam or cram files to fastq format and does quality control.
irliampa/conumee
irliampa/conumee_2
irliampa/deeplearning-biology
A list of deep learning implementations in biology
irliampa/dnaalnqc
ICGC-ARGO workflow for DNA-Seq alignment QC
irliampa/file_splitter
irliampa/IntPROAST
A wrapper to the PROAST R package by RIVM http://www.rivm.nl/en/Documents_and_publications/Scientific/Models/PROAST
irliampa/IsoXpressor
A tool to assess transcriptional activity within isochores
irliampa/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
irliampa/NPM-sample-qc
reference implementation of GA4GH WGS Quality Control Standards
irliampa/quality-control-wgs
Home for the GA4GH Quality Control of Whole Genome Sequencing metrics and reference implementations
irliampa/raredisease
Call and score variants from WGS/WES of rare disease patients.
irliampa/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
irliampa/Selma
Germline Variant Calling Pipeline built in Snakemake
irliampa/unicorn_project
A very rare project
irliampa/wgs-sample-qc
visit https://github.com/ga4gh/quality-control-wgs instead. Repository to host ongoing discussions by GHIF members on developing a reference implementation for QC of WGS results