/geniesys

Genome Integrative Explorer System (GenIE-Sys)

Primary LanguageJavaScriptBSD 3-Clause "New" or "Revised" LicenseBSD-3-Clause

DOI:10.1101/808881

Docker installation can be tested or run in several ways.

1.) Run using Play with Docker
The quickest way to test the GenIE-Sys, it takes only a few minutes

Try in PWD

2.) Run with already built in Docker image
The fastest way to run the GenIE-Sys locally or your own server

docker run --rm -i -t -p "80:80" -p "3308:3306" -v ${PWD}/genie:/app -v ${PWD}/mysql:/var/lib/mysql -e MYSQL_ADMIN_PASS="mypass" --name geniesys irusri/docker4geniesys

3.) Build image locally using Dockerfile and run.
This is quite slow since you have to build the image locally

git clone https://github.com/irusri/docker4geniesys.git  
cd docker4geniesys  
docker-compose up

You can access the MySQL database using mysql -u admin -pmypass -h localhost -P 3308 or using http://localhost/phpmyadmin. As you may noticed here admin is the default MySQL username and mypass is the default password. You can change the default password in docker-compose.yml file.

👍 You can access the GenIE-Sys on http://localhost/geniesys/ URL and follow the documentation.

Licence & Contributors

This work is under Free and Open Source licence

Contributions are welcome!