ishwarvh

Pinned Repositories

2017-ucsc-metagenomics
Workshop materials for shotgun metagenomics
Language:Jupyter Notebook0 1 00
An-Introduction-To-Applied-Bioinformatics
Interactive lessons in bioinformatics.
Language:Python1 2 00
angus
Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
Language:HTML10
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
1 1 00
awesome-pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
1 1 00
Bash-Snippets
A collection of small bash scripts for heavy terminal users
Language:Shell1 2 00
ggplot2
An implementation of the Grammar of Graphics in R
Language:R1 1 00
oneliners
Useful bash one-liners for bioinformatics.
10
swirl_courses
:mortar_board: A collection of interactive courses for the swirl R package.
Language:R10

ishwarvh's Repositories

ishwarvh/angus
Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
Language:HTML10
ishwarvh/Bash-Snippets
A collection of small bash scripts for heavy terminal users
Language:Shell1 2 00
ishwarvh/ggplot2
An implementation of the Grammar of Graphics in R
Language:R1 1 00
ishwarvh/2017-ucsc-metagenomics
Workshop materials for shotgun metagenomics
Language:Jupyter Notebook0 1 00
ishwarvh/al-folio-ishwar
A beautiful, simple, clean, and responsive Jekyll theme for academics
ishwarvh/BiocIntro
Course material for introductory R / Bioconductor courses
ishwarvh/biofx_python
Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)
ishwarvh/BMPWT_E12_individual_analysis
script for the individual analysis of the BMPWT_E12 dataset
Language:R
ishwarvh/bowtie2
A fast and sensitive gapped read aligner
Language:C++1 0
ishwarvh/cloud-genomics
Cloud Genomics lesson
ishwarvh/Contributions
Contribute Packages to Bioconductor
ishwarvh/cpython
The Python programming language
Language:Python
ishwarvh/Fbxo2_scRNAseq
Files associated with Fbxo2 single cell RNA seq data analysis
ishwarvh/galaxy
Data intensive science for everyone.
Language:Python
ishwarvh/hail
Scalable genomic data analysis.
Language:Scala
ishwarvh/ishwarvh.github.io
files associated with my general website
ishwarvh/JuliaTutorials
Learn Julia via interactive tutorials!
Language:Jupyter Notebook1 0
ishwarvh/MAST
Tools and methods for analysis of single cell assay data in R
Language:R1 0
ishwarvh/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
Language:Python2 0
ishwarvh/nextflow
A DSL for data-driven computational pipelines
Language:Groovy2 0
ishwarvh/openintro-r-package
R Package: openintro
Language:R1 0
ishwarvh/pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
Language:Python2 0
ishwarvh/python-cheatsheet
Basic cheatsheet for Python
ishwarvh/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
Language:R2 0
ishwarvh/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
Language:Rust1 0
ishwarvh/scikit-bio
scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.
Language:Python
ishwarvh/STAR
RNA-seq aligner
Language:C
ishwarvh/vigilant-guide
Files associated with my website
ishwarvh/wrangling-genomics
Data Wrangling and Processing for Genomics
ishwarvh/youtube-dl
Command-line program to download videos from YouTube.com and other video sites
Language:Python