Pinned Repositories
angsd
Program for analysing NGS data.
decluster
best-free-resources
Best resources (websites, youtube channels, videos, notes etc.) I use for learning awesome stuff!
gptchatteR
An experimental and unofficial wrapper for interacting with OpenAI GPT models in R.
Hesaplamali_Biyoloji_ve_Biyoinformatige_Giris_2020
05.02.2020 tarihinde düzenlenen 5. Hacettepe Biyoloji ve Uygulamaları Kongresi dahilindeki "Hesaplamalı Biyoloji ve Biyoinformatiğe Giriş" isimli çalıştayına ait ders notları ve verileri içerir. (Lecture notes and datasets for the Introduction to Computational Biology and Bioinformatics workshop, in Turkish)
ngsAMOVA
Tool for performing AMOVA, Dxy and neighbor joining trees with NGS data
PopulasyonBuyumesi
Population growth simulations with RShiny (in Turkish) https://isinaltinkaya.shinyapps.io/PopulasyonBuyumesiSimulasyonlari/
vcfgl
Genotype likelihood simulator for VCF/BCF files
WPSG2022
HMMploidy
A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models
isinaltinkaya's Repositories
isinaltinkaya/gptchatteR
An experimental and unofficial wrapper for interacting with OpenAI GPT models in R.
isinaltinkaya/vcfgl
Genotype likelihood simulator for VCF/BCF files
isinaltinkaya/WPSG2022
isinaltinkaya/best-free-resources
Best resources (websites, youtube channels, videos, notes etc.) I use for learning awesome stuff!
isinaltinkaya/actg-lock
An i3lock lockscreen template. When you lock your screen, you can see the DNA sequence flowing in the matrix way.
isinaltinkaya/cheatsheets
isinaltinkaya/i3gcalendar
A script to see the closest event in your Google Calendar on your i3blocks bar.
isinaltinkaya/adv_binf_2021_week1
Teaching material used in the "Advanced Bioinformatics for Next-Generation Sequencing" class, University of Copenhagen, 2021
isinaltinkaya/bash-functions
Time saver automatization functions to add your bashrc
isinaltinkaya/bash-script-generator
Generate bash scripts with pre-written header and open with vim to start coding immediately.
isinaltinkaya/Copenhagen-Popgen-Course
Teaching materials for Copenhagen course in high throughput sequencing data for population genetics
isinaltinkaya/CSwR22_Group2
Repository for the presentation of CSwR 2022 class group 2.
isinaltinkaya/CV
Isin Altinkaya's Curriculum Vitae.
isinaltinkaya/DataScienceCourse
isinaltinkaya/gitgpt
Make ChatGPT write commit messages for you
isinaltinkaya/ngsAMOVA
Tool for performing AMOVA, Dxy and neighbor joining trees with NGS data
isinaltinkaya/popgen2022
isinaltinkaya/angsd-troubleshooting-guide
isinaltinkaya/bioconda-recipes
Conda recipes for the bioconda channel.
isinaltinkaya/CSwR
Computational Statistics with R
isinaltinkaya/decluster_paper_scripts
Pipeline and code snippets used in decluster paper analyses
isinaltinkaya/google-slides_scripts
because why not
isinaltinkaya/HLA
xHLA: Fast and accurate HLA typing from short read sequence data
isinaltinkaya/IBD_benchmark
isinaltinkaya/isinaltinkaya
isinaltinkaya/isinaltinkaya.github.io
isinaltinkaya/ISSUE_TEMPLATE
isinaltinkaya/PopGenForensicAnalysis22
My notes and scripts for the course Population Genetics and Forensic Analysis 2022, University of Copenhagen.
isinaltinkaya/R_collection
Some potentially useful R functions, codes, tips, and tricks. Feel free to use!
isinaltinkaya/vcfgl_benchmarking