Abundance Matrix Operations in R
Visit the package's website.
This package is a collection of functions that are useful for performing common tasks with abundance tables.
The original code was written mostly to deal with abundance of bacterial marker genes in metagenomic data, but the functions can be useful for many other types of data where a table of samples by features is accompanied by metadata on both the samples and features.
A few statistical analysis utilities are present, like GLMs and ordination methods, but still are a work in progress.
Installation
The easiest way to install is with the devtools package. Make sure you have it installed and use
devtools::install_github("surh/AMOR")If you want to get the development version, you can use
devtools::install_github("surh/AMOR",ref = "dev")Status of the develpment version can be seen below:
Copyright & license
(C) Copyright 2015-2018 Sur Herrera Paredes
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.