Human Immune Monitoring Center at Mount Sinai

Human Immune Monitoring Center at the Icahn School of Medicine at Mount Sinai.

Hess Center for Science and Medicine 1470 Madison Avenue New York, NY 10029

Pinned Repositories

admin-app
Language:JavaScript1 2 00
clustergrammer-gl
WebGL Clustergrammer JavaScript Library
Language:JavaScript23 3 4518
clustergrammer2
"Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.
Language:HTML116 4 7120
clustergrammer2-notebooks
Examples using Clustergrammer2 to explore high-dimensional datasets.
Language:Jupyter Notebook40 4 911
codex_dashboard
Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data
Language:Jupyter Notebook16 2 54
covid-19_sinai_reviews
Language:Jupyter Notebook8 4 37
cytutils
Cytometry quality control and reproducibility utilities
Language:R8 6 47
rapids-single-cell-examples
Examples of single-cell genomic analysis accelerated with RAPIDS
Language:Jupyter Notebook1 1 00
scanpy-batch-correct
Language:HTML1 3 01
visium-clustergrammer2
Spatial Transcriptomics Dashboard
Language:Jupyter Notebook28 4 115

Human Immune Monitoring Center at Mount Sinai's Repositories

ismms-himc/clustergrammer2
"Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.
Language:HTML116 4 7120
ismms-himc/clustergrammer2-notebooks
Examples using Clustergrammer2 to explore high-dimensional datasets.
Language:Jupyter Notebook40 4 911
ismms-himc/visium-clustergrammer2
Spatial Transcriptomics Dashboard
Language:Jupyter Notebook28 4 115
ismms-himc/clustergrammer-gl
WebGL Clustergrammer JavaScript Library
Language:JavaScript23 3 4518
ismms-himc/codex_dashboard
Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data
Language:Jupyter Notebook16 2 54
ismms-himc/covid-19_sinai_reviews
Language:Jupyter Notebook8 4 37
ismms-himc/cytutils
Cytometry quality control and reproducibility utilities
Language:R8 6 47
ismms-himc/cellranger-aws-pipeline-docs
Language:Python1 2 12
ismms-himc/rapids-single-cell-examples
Examples of single-cell genomic analysis accelerated with RAPIDS
Language:Jupyter Notebook1 1 00
ismms-himc/visium_analysis
Language:Python0 1 00
ismms-himc/biomed-scientist-against-visa-bans
Language:HTML1 01
ismms-himc/clustergrammer-binder-upload-test
1 0
ismms-himc/clustergrammer-widget2-deprecated
Language:Python2 0
ismms-himc/clustergrammer2-signatures
Collection of cell type and cell state signatures built to easily integrate with Clustergrammer2 single cell toolkit.
2 1
ismms-himc/clustergrammer2-test
Language:Jupyter Notebook2 0
ismms-himc/clustergrammer2_test
Language:HTML2 0
ismms-himc/codex_spatial_spleen
Language:HTML1 0
ismms-himc/covid-19_tenoever
Language:Jupyter Notebook2 0
ismms-himc/gaussian-density
Using voila with bqplot to visualize gaussian density
Language:Jupyter Notebook1 0
ismms-himc/himc_dockers
Docker builds for all tools used by HIMC
Language:Dockerfile1 0
ismms-himc/himc_helper_functions
Language:Python2 19
ismms-himc/LegendScreen_CyTOF
Language:Jupyter Notebook2 01
ismms-himc/LuminexApp
Language:R1 0
ismms-himc/LuminexTools
Luminex related processing pipeline
Language:R1 0
ismms-himc/OlinkApp
Language:R1 0
ismms-himc/recursive_gsea
Language:HTML1 0
ismms-himc/VEGF_A_Hormigo
1 0
ismms-himc/visium_deconvolution
Language:Batchfile
ismms-himc/visium_segmentation
Language:Python
ismms-himc/voila
From Jupyter notebooks to standalone web applications and dashboards
Language:Python1 0