isovic/racon

error: unequal lengths in sequence and overlap file for sequence 2525deca-ece8-4652-8429-19ca02a0aeca!

setshabaTaukobong opened this issue · 1 comments

Hi there, I am getting the following issue after running racon:

[racon::Polisher::initialize] loaded target sequences 3.574446 s
[racon::Polisher::initialize] loaded sequences 33.367121 s
[racon::Overlap::transmute] error: unequal lengths in sequence and overlap file for sequence 2525deca-ece8-4652-8429-19ca02a0aeca!
I typed the following command for racon:
racon -m 8 -x -8 -g -6 -w 500 -t 4 /home/staukobong/data/sample_id.trimmed.fastq /home/staukobong/data/sample_id.sam /home/staukobong/data/Assembled/00-assembly/draft_assembly.fasta > sample_idRac.fasta

And I used minimap2 to map my reads to the assembled genome:
minimap2 -a -t 4 /home/staukobong/data/Assembled/00-assembly/draft_assembly.fasta /home/staukobong/data/sample_id.trimmed.fastq > sample_id.sam

Could I please get some assistance on this?

I used Flye to do the assembly and using Nanopore fastq reads