Pinned Repositories
assemblyStats
Run Assembly statistics on a genome assembly (BUSCO and assemblyStats and new_Assemblathon.pl)
blast
NextFlow implementation of BLAST program
freebayes
Freebayes parallelization using nextflow
GATK-flow
Nextflow implementation of the GATK HaplotypeCaller pipeline
nanoPolish
Polish a nanopore assembly using Racon and Medaka
nanoQCtrim
Performs Nanoplot QC using nanoplot and adaptor trimming using downpore
parallel
polishCLR
A nextflow pipeline for polishing CLR assemblies
RNAseq
RNAseq from fastq reads to gene counts/quantification
tutorial
Tutorial on how to use nextflow to create a workflow for blast
isugifNF's Repositories
isugifNF/polishCLR
A nextflow pipeline for polishing CLR assemblies
isugifNF/GATK-flow
Nextflow implementation of the GATK HaplotypeCaller pipeline
isugifNF/assemblyStats
Run Assembly statistics on a genome assembly (BUSCO and assemblyStats and new_Assemblathon.pl)
isugifNF/blast
NextFlow implementation of BLAST program
isugifNF/tutorial
Tutorial on how to use nextflow to create a workflow for blast
isugifNF/parallel
isugifNF/alphafold
fast draft, quick testing
isugifNF/freebayes
Freebayes parallelization using nextflow
isugifNF/nanoPolish
Polish a nanopore assembly using Racon and Medaka
isugifNF/nanoQCtrim
Performs Nanoplot QC using nanoplot and adaptor trimming using downpore
isugifNF/RNAseq
RNAseq from fastq reads to gene counts/quantification
isugifNF/bwamem2