Pinned Repositories
crAssphage_M186D4_analyses
The data and scripts required to reproduce the 16S analyses used in Brown et al. 2019
ECHOBioMech
gcc-12-branch
GCC 12 for Darwin with experimental Arm64 support. Current release 12.2-darwin-r0 [August 2022]
GutMicrobes_analyses
The data and scripts required to reproduce the analyses used in Brown et al. 2019 Gut Microbes
itsmisterbrown.github.io
personal site with wordpress
JaspanLab
Jaspan lab website with Wordpress
legacy.itsmisterbrown.github.io
marker_gene_dataset_merging_functions
R functions for the merging of multiple marker gene datasets as phyloseq-class objects. Several mathematical transformations and standardizations are performed during merging to preserve relative ratios of taxa; transformations are user-specified.
microfiltR
accessory functions for processing microbial community data
test
tt
itsmisterbrown's Repositories
itsmisterbrown/microfiltR
accessory functions for processing microbial community data
itsmisterbrown/crAssphage_M186D4_analyses
The data and scripts required to reproduce the 16S analyses used in Brown et al. 2019
itsmisterbrown/ECHOBioMech
itsmisterbrown/gcc-12-branch
GCC 12 for Darwin with experimental Arm64 support. Current release 12.2-darwin-r0 [August 2022]
itsmisterbrown/GutMicrobes_analyses
The data and scripts required to reproduce the analyses used in Brown et al. 2019 Gut Microbes
itsmisterbrown/itsmisterbrown.github.io
personal site with wordpress
itsmisterbrown/JaspanLab
Jaspan lab website with Wordpress
itsmisterbrown/legacy.itsmisterbrown.github.io
itsmisterbrown/marker_gene_dataset_merging_functions
R functions for the merging of multiple marker gene datasets as phyloseq-class objects. Several mathematical transformations and standardizations are performed during merging to preserve relative ratios of taxa; transformations are user-specified.
itsmisterbrown/test
tt
itsmisterbrown/transmission_analyses
itsmisterbrown/updated_16S_dbs
updated 16S databases for marker gene taxonomic assignment