Pinned Repositories
ALPS
AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
DataScience-Projects
ML/DS projects with a blogpost 📝 ✒️ @ https://itsvenu.github.io/
Detect_Homopolymer
Script detects whether the variant called from NGS data is in Homopolymer site on reference genome(hg19).
ISMB2019
R package to get tweets from ISMB/ECCB 2019 conference, Basel. Full doc: itsvenu.github.io/ismb2019/
MachineLearning-A2Z
ML Roadmap 🛣️📌⏳
OneLiners
OneLiners
SequenceMiner
Connects to online databases - PDB, PFAM, RFAM, EMBL, PROSITE, UNIPROT.
Signatures-Manuscript
Mutational Signatures extraction - Pediatric cancers
itsvenu's Repositories
itsvenu/ALPS
AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
itsvenu/MachineLearning-A2Z
ML Roadmap 🛣️📌⏳
itsvenu/OneLiners
OneLiners
itsvenu/DataScience-Projects
ML/DS projects with a blogpost 📝 ✒️ @ https://itsvenu.github.io/
itsvenu/ISMB2019
R package to get tweets from ISMB/ECCB 2019 conference, Basel. Full doc: itsvenu.github.io/ismb2019/
itsvenu/Detect_Homopolymer
Script detects whether the variant called from NGS data is in Homopolymer site on reference genome(hg19).
itsvenu/SequenceMiner
Connects to online databases - PDB, PFAM, RFAM, EMBL, PROSITE, UNIPROT.
itsvenu/Signatures-Manuscript
Mutational Signatures extraction - Pediatric cancers
itsvenu/Protein-contact-map
Neighboring residues of each residue within 8A distance.
itsvenu/another-test
just testinggg
itsvenu/CenterOfMass-Protein
Coordinates of center of mass and distance of each residue from COM.
itsvenu/ConsensusSequence
Finding the most likely common ancestor / a consensus sequence of a group of sequences.
itsvenu/deBruijn_assembly
k-mer based assembly of sequence by the help of deBruijn grpah
itsvenu/HalfLife-Protein
Protein in vivo half life: N-end Rule
itsvenu/inTAD-shiny
inTAD-shiny development
itsvenu/itsvenu.github.io
Blog
itsvenu/k-merStats-Genomics
Scripts useful analyzing genomic sequences in terms of k-mers
itsvenu/MYC-Manuscript
Specific analysis code bits for JE,VT 2020 (excluding custom pipelines)
itsvenu/NT-SequenceAnalysis
Various scripts for analysing the nucleotide sequences. Number of nucleotides, GC content of sequences etc.
itsvenu/ParsePDB
Parse pdb file
itsvenu/Protein-DistanceMeasures
Evidence of protein CT folding from structure.
itsvenu/Protein-GRAVY
Protein Grand Average of Hydropathy.
itsvenu/ProteinCompactness
Compactness of a protein conformation through Radius of Gyration & Moment of Inertia
itsvenu/ProteinStats
Amino acid composition of a protein sequence
itsvenu/TerminalHydrophobicity
Terminal hydrophobicity of a sequence - Important for determination of CT protein folding
itsvenu/testVT