ivanjayapurna

Pinned Repositories

2d_particle_sim
A 2D particle simulator to be connected to OpenWSN or similar network simulator to test micro-robot control functions and algorithms
Language:Python0 1 00
adversarial_attack_attentivechrome
Adversarially Attacking AttentiveChrome with PGD / FGSM (modifying processed input of binned histone modification data)
Language:Jupyter Notebook1 2 00
berkeleyAiChE.github.io
UC Berkeley AIChE Student Chapter Website
Language:CSS1 2 00
cam_data_conversion
A python script using OpenCV, PIL, and ufp packages to convert Raspberry Pi Camera feed into SWARM Lab Research Camera quality feed
Language:Python0 2 00
chec
Chec Consulting Website
Language:CSS1 1 00
decades_classifier
Basic transfer learning image classifier, using pre-trained ImageNet model to classify yearbook faces into decades.
Language:Python0 2 00
GPC_Trace_Plotter
Python script that plots batches of GPC data with customizable figure quality and with baseline correction implemented. Written for use by the Ting Xu Lab, UC Berkeley.
Language:Jupyter Notebook0 1 00
low-n-protein-engineering
A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented in Biswas et al.
Language:Jupyter Notebook26 3 38
RHPapp
Xu Group's Compositional Drift App but high throughput - for bulk simulation and generation of simulated polymer sequence datasets.
Language:Jupyter Notebook4 2 04
spawn_multiple_hector_quadrotors
Bash script and launch files to spawn multiple hector quadrotors in an emtpy Gazebo world, controlled by ROS nodes.
Language:Shell2 2 01

ivanjayapurna's Repositories

ivanjayapurna/low-n-protein-engineering
A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented in Biswas et al.
Language:Jupyter Notebook26 3 38
ivanjayapurna/RHPapp
Xu Group's Compositional Drift App but high throughput - for bulk simulation and generation of simulated polymer sequence datasets.
Language:Jupyter Notebook4 2 04
ivanjayapurna/spawn_multiple_hector_quadrotors
Bash script and launch files to spawn multiple hector quadrotors in an emtpy Gazebo world, controlled by ROS nodes.
Language:Shell2 2 01
ivanjayapurna/adversarial_attack_attentivechrome
Adversarially Attacking AttentiveChrome with PGD / FGSM (modifying processed input of binned histone modification data)
Language:Jupyter Notebook1 2 00
ivanjayapurna/berkeleyAiChE.github.io
UC Berkeley AIChE Student Chapter Website
Language:CSS1 2 00
ivanjayapurna/chec
Chec Consulting Website
Language:CSS1 1 00
ivanjayapurna/xu_group_website
Proposed new Xu Group Website Layout
Language:HTML1 2 02
ivanjayapurna/2d_particle_sim
A 2D particle simulator to be connected to OpenWSN or similar network simulator to test micro-robot control functions and algorithms
Language:Python0 1 00
ivanjayapurna/cam_data_conversion
A python script using OpenCV, PIL, and ufp packages to convert Raspberry Pi Camera feed into SWARM Lab Research Camera quality feed
Language:Python0 2 00
ivanjayapurna/decades_classifier
Basic transfer learning image classifier, using pre-trained ImageNet model to classify yearbook faces into decades.
Language:Python0 2 00
ivanjayapurna/GPC_Trace_Plotter
Python script that plots batches of GPC data with customizable figure quality and with baseline correction implemented. Written for use by the Ting Xu Lab, UC Berkeley.
Language:Jupyter Notebook0 1 00
ivanjayapurna/CompositionalDrift
Simulates polymer chain growth based on the Mayo Lewis equation and the Monte Carlo method
ivanjayapurna/DOE_python
Very simple Design of Experiments (DOE) python setup for flexible application to any project. Currently only LHS algorithm implemented. Links attached to add more.
Language:Jupyter Notebook2 0
ivanjayapurna/hrp_assay_analysis
Colorimetric analysis of HRP assays from video files
Language:Python
ivanjayapurna/image_colour_counter
Input an image and apply KMeans clustering to count the percentage of each colour in the image. This was built for protein surface composition analysis.
Language:Python1 0
ivanjayapurna/ivanjayapurna.github.io
Personal Website
Language:SCSS1 0
ivanjayapurna/jax-unirep
Reimplementation of the UniRep protein featurization model.
Language:Python1 0
ivanjayapurna/nanodrop_trace_plotter
Plotter raw data files from the nanodrop
Language:Jupyter Notebook2 0
ivanjayapurna/pix2pixHD
Synthesizing and manipulating 2048x1024 images with conditional GANs
ivanjayapurna/protein_seq_mutator
Mutates protein sequences based on standard mutation code
Language:Python
ivanjayapurna/rhp_combinatoric
Sequence Space Calculation for RHP
Language:Jupyter Notebook
ivanjayapurna/rxnmapper
RXNMapper: Unsupervised attention-guided atom-mapping
Language:Python1 0
ivanjayapurna/UniRep
UniRep model, usage, and examples.
ivanjayapurna/uv_vis_aggregator
Clean messy UV-Vis input and load data into Pandas DataFrames for Aggregation and further analysis (TBD)
Language:Jupyter Notebook1 0