Pinned Repositories
spheres-augur-build
This repository analyzes viral genomes using Nextstrain to understand how SARS-CoV-2, the virus that is responsible for the COVID-19 pandemic, evolves and spreads. This is a copy of the original Nextstrain ncov repository, which will (by default) build augur all 50 states + DC + PR using the same parameters and subsampling strategy.
pTrimmer
Used to trim off the primer sequence from mutiplex amplicon sequencing
AdventOfCode21
Advent of Code 2021 solutions
annotate-subject-categories
Adds a column of categorical data to input file
distclust-dbscan
Naive clustering of distance and similarity matrices.
ncov
Nextstrain build for novel coronavirus SARS-CoV-2
prune-distance-matrix
seaborn-palette-examples
Seaborn palettes, 60 colors
spheres-augur-build
This repository analyzes viral genomes using Nextstrain to understand how SARS-CoV-2, the virus that is responsible for the COVID-19 pandemic, evolves and spreads. This is a copy of the original Nextstrain ncov repository, which will (by default) build augur all 50 states + DC + PR using the same parameters and subsampling strategy.
update-nextclade-dataset
Update Nextclade Dataset (sars-cov-2)
jacaravas's Repositories
jacaravas/spheres-augur-build
This repository analyzes viral genomes using Nextstrain to understand how SARS-CoV-2, the virus that is responsible for the COVID-19 pandemic, evolves and spreads. This is a copy of the original Nextstrain ncov repository, which will (by default) build augur all 50 states + DC + PR using the same parameters and subsampling strategy.
jacaravas/update-nextclade-dataset
Update Nextclade Dataset (sars-cov-2)
jacaravas/AdventOfCode21
Advent of Code 2021 solutions
jacaravas/annotate-subject-categories
Adds a column of categorical data to input file
jacaravas/distclust-dbscan
Naive clustering of distance and similarity matrices.
jacaravas/ncov
Nextstrain build for novel coronavirus SARS-CoV-2
jacaravas/prune-distance-matrix
jacaravas/seaborn-palette-examples
Seaborn palettes, 60 colors