jackgisby
Biomedical data scientist @ Queen Mary University of London. Using and developing data science approaches to investigate disease.
Queen Mary University of LondonLondon
Pinned Repositories
ReCoDE_rnaseq_pipeline
A parallelised pipeline for the analysis of RNA sequencing data. This repository is part of Imperial College London's ReCoDE project, which aims to support teaching and learning in research computing and data science.
covid-longitudinal-multi-omics
Repository for the paper: "Multi-omics identify LRRC15 as a COVID-19 severity predictor and persistent pro-thrombotic signals in convalescence" by Gisby and Norzawani et al. doi: https://doi.org/10.1101/2022.04.29.22274267
deepmet
A deep one class model for the identification of endogenous metabolites.
ica_omics_modelling
longitudinal_olink_proteomics
Repository for the paper: "Longitudinal proteomic profiling of dialysis patients with COVID-19 reveals markers of severity and predictors of death" by Gisby et al. doi: https://doi.org/10.7554/eLife.64827
mr-nextflow
MR for multiple exposures implemented using nextflow
packFinder
A package for the de novo discovery of pack-TYPE transposons
ReducedExperiment
Containers for dimensionally-reduced -omics data
tfl-bikes-data-pipeline
Processing TfL data for bike usage with Google Cloud Platform.
jackgisby's Repositories
jackgisby/tfl-bikes-data-pipeline
Processing TfL data for bike usage with Google Cloud Platform.
jackgisby/longitudinal_olink_proteomics
Repository for the paper: "Longitudinal proteomic profiling of dialysis patients with COVID-19 reveals markers of severity and predictors of death" by Gisby et al. doi: https://doi.org/10.7554/eLife.64827
jackgisby/packFinder
A package for the de novo discovery of pack-TYPE transposons
jackgisby/covid-longitudinal-multi-omics
Repository for the paper: "Multi-omics identify LRRC15 as a COVID-19 severity predictor and persistent pro-thrombotic signals in convalescence" by Gisby and Norzawani et al. doi: https://doi.org/10.1101/2022.04.29.22274267
jackgisby/mr-nextflow
MR for multiple exposures implemented using nextflow
jackgisby/deepmet
A deep one class model for the identification of endogenous metabolites.
jackgisby/ica_omics_modelling
jackgisby/imid_rnaseq_processing
Pipeline for downloading and processing RNA-seq data
jackgisby/jackgisby
jackgisby/jackgisby.github.io
Site based on a Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
jackgisby/metaboblend
Python package for de novo structural elucidation of small molecules in mass spectrometry-based Metabolomics
jackgisby/ReducedExperiment
Containers for dimensionally-reduced -omics data
jackgisby/RFmarkerDetector
jackgisby/subset_sum
Parallel implementation of subset sum in Python
jackgisby/mini_projects
Miscellaneous mini projects, such as kaggle notebooks
jackgisby/ReCoDE_rnaseq_pipeline
A parallelised pipeline for the analysis of RNA sequencing data. This repository is part of Imperial College London's ReCoDE project, which aims to support teaching and learning in research computing and data science.