jackmo375
researcher in Human Genetics and Sickle Cell disease with @sickle-in-africa
University of Cape TownCape Town, South Africa
jackmo375's Stars
compbiocore/VariantVisualization.jl
Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
sheynkman-lab/Long-Read-Proteogenomics
A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
lifebit-ai/GATK
Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices
TheJacksonLaboratory/splicing-pipelines-nf
Repository for the Anczukow-Lab splicing pipeline
hadley/r4ds
R for data science: a book
ISCB-Academy/Elements-of-Style-Reproducible-Workflow-Creation-Maintenance-Tutorial
MareesAT/GWA_tutorial
A comprehensive tutorial about GWAS and PRS
JoniColeman/gwas_scripts
Codebook from my GWAS cookbook
esohkevin/gwas-tips
tips and tricks in genome-wide association studies - a tutorial
montilab/nf-gwas-pipeline
A Nextflow Genome-Wide Association Study (GWAS) Pipeline
scdodev/scdo-ontology
Sickle Cell Disease Ontology
wch/rgcookbook
R Graphics Cookbook
geocompx/geocompr
Geocomputation with R: an open source book
PapenfussLab/sv_benchmark
Comprehensive benchmark of structural variant callers
J35P312/SVDB
structural variant database software
J35P312/FindSV
Structural variant pipeline
biowdl/structural-variantcalling
A workflow for calling structural variants. Category:Single-Sample
Illumina/manta
Structural variant and indel caller for mapped sequencing data
NBISweden/wgs-structvar
Whole Genome Sequenceing Structural Variation Pipelines
pegi3s/dockerfiles
This repository contains Docker files for the images maintained by the Phenotypic Evolution Group at the Institute for Molecular and Cell Biology / Instituto de Investigação e Inovação em Saúde da Universidade do Porto.
ga4gh/benchmarking-tools
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
CRG-CNAG/CalliNGS-NF
GATK RNA-Seq Variant Calling in Nextflow
nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
ncsa/GenomicsCortextVarNextflow
IARCbioinfo/gatk4-HaplotypeCaller-nf
GATK4 HaplotypeCaller step, in gVCF mode, first step for subsequent whole cohort Joint Genotyping.
IARCbioinfo/gatk4-GenotypeGVCFs-nf
Joint calling of gVCF, following GATK4 Best Practices
brwnj/smoove-nf
Nextflow implementation of the smoove workflow and other tools for SV calling and QC
nextflow-io/awesome-nextflow
A curated list of nextflow based pipelines
apptainer/singularity
Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.
h3abionet/h3agatk