Pinned Repositories
ABGDtree5
BayesianEcosystems_IAP
Notes and code for Bayesian ecosystem modeling IAP course
distHGT
scripts to HGT within eggNOG homologous groups by identifying significant changes in distances between phyla
indexHGT
pipeline to identify and assess possible HGTs as molecular clock constrains in the tree of life
iris
A powerful, easy to use, and community-driven Python library for analysing and visualising meteorological and oceanographic data sets.
jupyter_notebooks
Jupyter Notebooks from L.T. Rangel, PhD.
MIT-PraCTES
Materials for MIT workshop "Practical Computing Tutorials for Earth Scientists"
mwra-boston-logan-rainfall-data
A basic data analysis of Median monthly three day rainfall accumulation from Logan Airport NOAA data from the MWRA BHWQM dataset.
Treemmer
indexHGT
pipeline to identify and assess possible HGTs as molecular clock constrains in the tree of life
jackpayette's Repositories
jackpayette/ABGDtree5
jackpayette/BayesianEcosystems_IAP
Notes and code for Bayesian ecosystem modeling IAP course
jackpayette/distHGT
scripts to HGT within eggNOG homologous groups by identifying significant changes in distances between phyla
jackpayette/indexHGT
pipeline to identify and assess possible HGTs as molecular clock constrains in the tree of life
jackpayette/iris
A powerful, easy to use, and community-driven Python library for analysing and visualising meteorological and oceanographic data sets.
jackpayette/jupyter_notebooks
Jupyter Notebooks from L.T. Rangel, PhD.
jackpayette/MIT-PraCTES
Materials for MIT workshop "Practical Computing Tutorials for Earth Scientists"
jackpayette/mwra-boston-logan-rainfall-data
A basic data analysis of Median monthly three day rainfall accumulation from Logan Airport NOAA data from the MWRA BHWQM dataset.
jackpayette/swirl_courses
A collection of interactive courses for the swirl R package.
jackpayette/Treemmer
jackpayette/BuildFasta
A script for parsing fasta files; given an original fasta, input file of headers by line breaks, and output file name
jackpayette/CDI
Clade Displacement Index
jackpayette/CO2EmissionPractice
This repo is to practice using GitHub with a CO2 emission data file
jackpayette/Cyano_clock7
Molecular Clock output data analysis
jackpayette/eggNOGbyClass3
jackpayette/mms_data_hunt
jackpayette/Nitrilase
Nitrilase molecular clock node age analysis
jackpayette/Notebooks
jackpayette/ParseAln
jackpayette/planets
Software Carpentry Workshop practice
jackpayette/planets_practice202001
a practice repo for learning Git
jackpayette/Scialog_sulfur
Code repository including scripts, data, figures and other files for Scialog Sulfur Assimilation gene history research project
jackpayette/SEM_flood_risk_roadways_data_analysis
Data Analysis on Risk of Flooding, Erosion, and Climate Impacts (Sea Level Rise, Increased Rainfall Intensity) on Roadways in Boston, MA, USA.
jackpayette/splits-bipartition-table-function
For parsing bipartition table data from IQtree 2.x tree building output .splits.nex for analysis in excel
jackpayette/tmp2
Test repo for PraCTES
jackpayette/treemmer-animate
jackpayette/user-rule
A collection of code and scripts to reclaim your data.
jackpayette/vimeo-api-examples
Some examples of how to use our APIs.
jackpayette/ZOMBI
Evolution simulator with extinct lineages