Befor running: - all input/output files must be in the cloudAnalyst folder for the make run command to execute successfully. Instructions for running: use command 'make run' in cloudAnalyst folder to run. You will be prompted for three pieces of information in this order: 1. the name of the input file. Enter to continue 2. the name of the output file. Enter to continue 3. A code, either 0 or 1. code: (USE CODE 0) 0 - run program once with given files 1 - runs program several times with different cutoffs and files (for testing purposes) Thanks! jacktevers@gmail.com if you have any issues :)