/2022-mdibl-fair

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FAIR 2022

These materials are for instruction as part of MDIBL's 2022 Reproducible and FAIR Bioinformatics Analysis of Omics Data course.

They are adapted from Alex's Lemonade Stand Foundation Childhood Cancer Data Lab training materials, Harvard Chan Bioinformatics Core lessons and Penn GCB 535 materials. (Sources used will be indicated in individual sections of instruction material.)

Development with Docker

Build with:

# Use BuildKit with output that is easier to read
export DOCKER_BUILDKIT=1
export BUILDKIT_PROGRESS=plain

# Build the image itself 
docker build -t 2022-mdibl-fair docker/.

Run with:

docker run \
  --mount type=bind,target=/home/rstudio/2022-mdibl-fair,source=$PWD \
  -e PASSWORD=<PASSWORD> \
  -p 8787:8787 \
  2022-mdibl-fair