jacobastern

jacobastern's Stars

• jacobastern/graph-construction-semi-supervised

  Experiments comparing the UMAP graph construction method with other graph construction methods for semi-supervised learning

  Language:Jupyter Notebook61

• dellacortelab/prospr

  ProSPr: Protein Structure Prediction

  Language:Python41885

• dellacortelab/bayes_design

  Using Bayes Theorem to design proteins

  Language:Python52

• dellacortelab/milcdock

  Language:Jupyter Notebook81

• Peldom/papers_for_protein_design_using_DL

  List of papers about Proteins Design using Deep Learning

  1.4k168

• sokrypton/ColabDesign

  Making Protein Design accessible to all via Google Colab!

  Language:Python552128

• RosettaCommons/RFDesign

  Protein hallucination and inpainting with RoseTTAFold

  Language:Python23467

• dtischer/trdesign-motif

  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/content/10.1101/2020.11.29.402743v1.abstract

  Language:Python163

• salesforce/progen

  Official release of the ProGen models

  Language:Python605111

• FrameworkComputer/Framework-Laptop-13

  Documentation for the Mainboard and other modules in the Framework Laptop 13

  Language:OpenSCAD1.6k67

• opensourceantibiotics/murligase

  Everything to do with the Mur Ligase Project

  Language:Rich Text Format296

• HannesStark/EquiBind

  EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein

  Language:Python473109

• octavian-ganea/equidock_public

  EquiDock: geometric deep learning for fast rigid 3D protein-protein docking

  Language:Roff23158

• Chen-Cai-OSU/awesome-equivariant-network

  Paper list for equivariant neural network

  980103

• sokrypton/ColabFold

  Making Protein folding accessible to all!

  Language:Jupyter Notebook1.9k474

• FlyingGiraffe/vnn

  Vector Neurons: A General Framework for SO(3)-Equivariant Networks

  Language:Python45247

• facebookresearch/esm

  Evolutionary Scale Modeling (esm): Pretrained language models for proteins

  Language:Python3.1k616

• pytorch/pytorch

  Tensors and Dynamic neural networks in Python with strong GPU acceleration

  Language:Python82.2k22.1k

• affjljoo3581/GPT2

  PyTorch Implementation of OpenAI GPT-2

  Language:Python27756

• ashishpatel26/Tools-to-Design-or-Visualize-Architecture-of-Neural-Network

  Tools to Design or Visualize Architecture of Neural Network

  4.3k564

• astooke/rlpyt

  Reinforcement Learning in PyTorch

  Language:Python2.2k323

• minimaxir/gpt-2-simple

  Python package to easily retrain OpenAI's GPT-2 text-generating model on new texts

  Language:Python3.4k675

• joshgreaves/reinforcement-learning

  Pytorch RL Algorithm Implementations

  Language:Python65

• ubalklen/where-is-the-key

  Machine Learning applied to the problem of finding Wally's keys

  1

• zhanghang1989/PyTorch-Encoding

  A CV toolkit for my papers.

  Language:Python2k450

• ankonzoid/artificio

  Deep Learning Computer Vision Algorithms for Real-World Use

  Language:Python410217