jacobfh1
Data Scientist in @hds-sandbox and in the Protein Research Group, Department of Biochemistry & Molecular Biology at University of Southern Denmark.
University of Southern DenmarkOdense, Denmark
Pinned Repositories
AlphaFold_Workshop
Predict protein folding structures using ColabFold. Gain a deeper understanding of protein folding prediction with AlphaFold2 and MMseqs2. Run the Jupyter notebook on UCloud, learn to interpret results, predict protein structures of interest. Technical requirements provided. Enhance your knowledge of protein folding and AlphaFold2's principles. Fam
proteomics-sandbox
A resource for biomedical students and researchers. Includes proteomics software tools like FragPipe, MaxQuant, PDV, SearchGUI, ThermoRawFileParser, and PeptideShaker. Offers a user-friendly interface, automated identification and quantification, comprehensive data analysis, and lightweight clone feature for optimized storage.
alphafold
Open source code for AlphaFold.
deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
DiaNN
DIA-NN - a universal automated software suite for DIA proteomics data analysis.
fasta-parser
The FASTA Parser Script is a Python tool for analyzing DNA or protein sequences, providing sequence statistics and generating tab-separated values (TSV) output files.
FileOrganizerTool
A versatile script for searching, copying, and unzipping files based on specific patterns. This tool is ideal for organizing files in bulk, especially when dealing with a mix of directories and file types.
ftp_directory_size
Python script to calculate directory size & file sizes by type on an FTP server. Customize server details, directory path, and credentials. Useful for FTP directory analysis & reporting.
hds-sandbox.github.io
Website for the Health Data Science Sandbox
jacobfh1.github.io
Website
jacobfh1's Repositories
jacobfh1/alphafold
Open source code for AlphaFold.
jacobfh1/deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
jacobfh1/DiaNN
DIA-NN - a universal automated software suite for DIA proteomics data analysis.
jacobfh1/fasta-parser
The FASTA Parser Script is a Python tool for analyzing DNA or protein sequences, providing sequence statistics and generating tab-separated values (TSV) output files.
jacobfh1/FileOrganizerTool
A versatile script for searching, copying, and unzipping files based on specific patterns. This tool is ideal for organizing files in bulk, especially when dealing with a mix of directories and file types.
jacobfh1/ftp_directory_size
Python script to calculate directory size & file sizes by type on an FTP server. Customize server details, directory path, and credentials. Useful for FTP directory analysis & reporting.
jacobfh1/hds-sandbox.github.io
Website for the Health Data Science Sandbox
jacobfh1/jacobfh1.github.io
Website
jacobfh1/training-quantitative-proteomics
Training material for quantitative proteomics. Mostly R modules given in Jupyter notebooks.