Pinned Repositories
Applied_R4eBio
Notebooks and material for R applications course
bsp
Code for reproducing the results of the paper "Body size phenotypes comprehensively assess cardiometabolic risk and refine the association between obesity and gut microbiota" (de la Cuesta-Zuluaga et al. 2017, International Journal of Obesity, doi: 10.1038/ijo.2017.281)
Col_OB_CHS
Code for analysis of metagenomes of Colombian adults in OB and CHS
data-science-learning-resources
A collection of machine learning resources that I've found helpful (I only post what I've read!)
Dieciseis
Maier Lab 16S rRNA workflow
microbio_aDiv
neckaR
R4eBio
Notebooks and material for Intro to R course
jacodela's Repositories
jacodela/neckaR
jacodela/microbio_aDiv
jacodela/R4eBio
Notebooks and material for Intro to R course
jacodela/Applied_R4eBio
Notebooks and material for R applications course
jacodela/bsp
Code for reproducing the results of the paper "Body size phenotypes comprehensively assess cardiometabolic risk and refine the association between obesity and gut microbiota" (de la Cuesta-Zuluaga et al. 2017, International Journal of Obesity, doi: 10.1038/ijo.2017.281)
jacodela/Col_OB_CHS
Code for analysis of metagenomes of Colombian adults in OB and CHS
jacodela/data-science-learning-resources
A collection of machine learning resources that I've found helpful (I only post what I've read!)
jacodela/Dieciseis
Maier Lab 16S rRNA workflow
jacodela/kitome
jacodela/metagMisc
Miscellaneous functions for metagenomic analysis.
jacodela/Methanomassilii
jacodela/Metemgee
Notebooks to obtain functional and taxonomic profiles from metagenomes
jacodela/msc-data-skills
Materials for MSc Data Skills course
jacodela/rbook
Source files for "Learning Statistics with R"
jacodela/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
jacodela/Struo
Ley Lab MetaGenome Profiler DataBase generator
jacodela/svm-r-markdown-templates
I have a suite of R Markdown templates for academic manuscripts, beamer presentations, and syllabi. I share them here.
jacodela/tests-as-linear
Common statistical tests are linear models (or: how to teach stats)
jacodela/thomas-adventuRe
Thomas' adventuRe
jacodela/westernization-1
jacodela/workflow-template-nextflow
Template for building a small workflow in Nextflow