jaesvi

Group Leader @Botton-Champalimaud | Postdoc @cortes-ciriano-lab | PhD student at @UMCUGenetics

Botton-Champalimaud Pancreatic Cancer CentreLisboa

Pinned Repositories

covid-19
A collection of work related to COVID-19
Language:Jupyter Notebook0 0 00
hmftools
Various algorithms for analysing genomics data
Language:Java0 0 00
jaesvi.github.io
Language:HTML0 1 00
liftOverBedpe
A liftOver wrapper to accomodate BEDPE files
Language:Python0 0 00
mutSigExtractor
An R package for extracting mutational signatures from vcf files
Language:R0 0 00
NextflowModules
UMCU Genetics Nextflow modules
Language:Nextflow0 0 00
PrepareAA
A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect.
Language:Python0 0 00
scripts
Language:R0 0 00
Starfish
Language:R0 0 00
samplot
Plot structural variant signals from many BAMs and CRAMs
Language:Python534 12 11568

jaesvi's Repositories

jaesvi/covid-19
A collection of work related to COVID-19
Language:Jupyter Notebook0 0 00
jaesvi/hmftools
Various algorithms for analysing genomics data
Language:Java0 0 00
jaesvi/jaesvi.github.io
Language:HTML0 1 00
jaesvi/liftOverBedpe
A liftOver wrapper to accomodate BEDPE files
Language:Python0 0 00
jaesvi/mutSigExtractor
An R package for extracting mutational signatures from vcf files
Language:R0 0 00
jaesvi/NextflowModules
UMCU Genetics Nextflow modules
Language:Nextflow0 0 00
jaesvi/PrepareAA
A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect.
Language:Python0 0 00
jaesvi/scripts
Language:R0 0 00
jaesvi/Starfish
Language:R0 0 00