Pinned Repositories
AoC21
Advent of Code 2021
arcasHLA
Fast and accurate in silico inference of HLA genotypes from RNA-seq
bioconda-recipes
Conda recipes for the bioconda channel.
dna-seq-neoantigen-prediction
Snakemake workflow for neoantigen prediction
dna-seq-varlociraptor
Variant detection with Delly and Freebayes, followed by statistical assessment with Varlociraptor
fgff
HLA-LA
Fast HLA type inference from whole-genome data
rna-seq-salmon-deseq2
RNA-seq workflow using salmon and deseq2
rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
varlociraptor
Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
jafors's Repositories
jafors/rna-seq-salmon-deseq2
RNA-seq workflow using salmon and deseq2
jafors/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
jafors/varlociraptor
Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
jafors/AoC21
Advent of Code 2021
jafors/arcasHLA
Fast and accurate in silico inference of HLA genotypes from RNA-seq
jafors/bioconda-recipes
Conda recipes for the bioconda channel.
jafors/dna-seq-neoantigen-prediction
Snakemake workflow for neoantigen prediction
jafors/dna-seq-varlociraptor
Variant detection with Delly and Freebayes, followed by statistical assessment with Varlociraptor
jafors/fgff
jafors/HLA-LA
Fast HLA type inference from whole-genome data
jafors/Homer_ChipSeq
A ChipSeq pipeline mostly based on HOMER
jafors/microphaser
jafors/neoepiscope
predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data
jafors/rna-seq-kallisto-sleuth
jafors/rna-seq-slamseq
Snakemake workflow for slamDunk toolkit
jafors/rna-seq-variant-calling
GATK best practice for rna-seq variant calling
jafors/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
jafors/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
jafors/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
jafors/vembrane