jajcobyang/ggmsa

:traffic_light: Visualizing pubication-quality multiple sequence alignment using ggplot2

library(ggmsa)
f <- system.file("extdata/sample.fasta", package="ggmsa")
ggmsa(f, 164, 213, color="Chemistry_AA")

TODO

color schemes

• http://www.jalview.org/help/html/colourSchemes/clustal.html
• https://www.dnastar.com/manuals/MegAlignPro/15.2/en/topic/selecting-color-schemes
• ...

fonts

• https://github.com/yixuan/fontr

ggtree support

• re-write ggtree::msaplot