jakelever
Lecturer at the University of Glasgow working on biomedical text mining
University of GlasgowGlasgow, Scotland
Pinned Repositories
biotext
Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
biowordlists
Biomedical wordlists (of drugs, genes, etc) for several text mining projects
cancermine
Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
civicmine
Text mining cancer biomarkers for the CIVIC database
corona-ml
Machine learning to text-mine coronavirus research for CoronaCentral.ai
kindred
A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).
knowledgediscovery
Analysis code for knowledge discovery project
pgxmine
Text mining for pharmacogenomic associations for PharmGKB
pubrunner
A framework for keeping biomedical text mining result up-to-date
VERSE
Vancouver Event and Relation System for Extraction
jakelever's Repositories
jakelever/kindred
A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).
jakelever/pubrunner
A framework for keeping biomedical text mining result up-to-date
jakelever/cancermine
Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
jakelever/pgxmine
Text mining for pharmacogenomic associations for PharmGKB
jakelever/civicmine
Text mining cancer biomarkers for the CIVIC database
jakelever/biowordlists
Biomedical wordlists (of drugs, genes, etc) for several text mining projects
jakelever/biotext
Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
jakelever/corona-ml
Machine learning to text-mine coronavirus research for CoronaCentral.ai
jakelever/corona-web
Website for viewing database of Coronavirus research at CoronaCentral.ai
jakelever/GNBR
Tools to work with Global Network of Biomedical Relationships data
jakelever/docstringtest
Little package to test if docstrings are up-to-date in Python code
jakelever/glasgowcs_labtest
Testing framework for online labs
jakelever/pubtator
Running various NER tools on big corpora
jakelever/text_classification_in_R
Demonstration of some text classification methods in R
jakelever/textae
jakelever/textasdata_bugbounty
Bug bounty programme for TextAsData course
jakelever/2020-03-23-stanford
jakelever/bigzenodo
Python tool for doing big uploads to Zenodo
jakelever/bioc
Data structures and code to read/write BioC XML and Json.
jakelever/bootstrap_lesson
Lesson materials for learning the bootstrap method
jakelever/glasgow-ai4biomed.github.io
jakelever/gputest
Basic test case for stressing a GPU
jakelever/isub
Job submitter for OpenShift cluster
jakelever/jakelever.github.io
Personal webpage
jakelever/mesh_extract
Tool for extracting MeSH tags from PubMed documents
jakelever/python-base
Dockerfile with some useful dependencies installed
jakelever/rainstorm
Some Python experiments
jakelever/spans_and_trees
jakelever/swc-machine-learning-short
jakelever/transpose
Command-line tool to transpose data