Pinned Repositories
hicpileup
hicpileup generates HIC pileups around a BED file features
bedCons
Calculate conservation statistics over regions in a BED file, from a phyloP or phastCons bigWig
golang-eb
Deploy sample golang webapp to single instance elastic beanstalk with TLS.
karyopype
A chromosomal visualization package for python.
nxgn-tools
Tools written for working with next-generation sequencing data
nxgnTools
Learning golang by rewriting nxgn tools in golang
rstudio_singularity_slurm
Run Rstudio server on remote host with SLURM using a SOCKS5 tunnel.
gopeaks
Peak caller for CUT&TAG data
snakemake-executor-plugin-azure-batch
A Snakemake executor plugin for submitting jobs to Microsoft Azure Batch.
snakemake-storage-plugin-azure
Snakemake storage plugin for Azure Blob Storage
jakevc's Repositories
jakevc/karyopype
A chromosomal visualization package for python.
jakevc/bedCons
Calculate conservation statistics over regions in a BED file, from a phyloP or phastCons bigWig
jakevc/golang-eb
Deploy sample golang webapp to single instance elastic beanstalk with TLS.
jakevc/nxgn-tools
Tools written for working with next-generation sequencing data
jakevc/snakemake_inputfuncs
Example Snakemake workflow describing the use of input functions.
jakevc/awsEbTest
jakevc/azure-storage-azcopy
The new Azure Storage data transfer utility - AzCopy v10
jakevc/bioconda-recipes
Conda recipes for the bioconda channel.
jakevc/bmatrix
Matrix implementation in rust with BTC
jakevc/conda-package-publish-action
Github Action to deploy conda package to Anaconda repository
jakevc/course-v3
The 3rd edition of course.fast.ai
jakevc/cutAnd_seacr
Input: fastq or bams; Output: bedgraphs, seacr peaks, counts table
jakevc/easybuild-easyconfigs
A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
jakevc/Genie
Validation and processing of GENIE files
jakevc/Genomic-ULMFiT
ULMFiT for Genomic Sequence Data
jakevc/gophercises
Go problems from https://gophercises.com/
jakevc/higlass-manage
A utility script to manage local docker instances of HiGlass
jakevc/hugo-theme-hello-friend-ng
Pretty basic theme for Hugo that covers all of the essentials. All you have to do is start typing!
jakevc/jakevc
website
jakevc/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
jakevc/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
jakevc/nf-genie
Nextflow workflow for main GENIE processing
jakevc/nlpsandbox-client
Python client to interact with the NLP Sandbox
jakevc/one-click-hugo-cms
jakevc/qdrant-helm
jakevc/rawpy
📷 RAW image processing for Python, a wrapper for libraw
jakevc/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
jakevc/snakemake-azbatch-example
Example workflow for snakemake azure batch example workflow
jakevc/snakemake_multiqc
An example use of multiQC within snakemake
jakevc/terraec2-
Terraform EC2 example