Pinned Repositories
BITFAM
BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequencing data. Please see Gao S et al., Genome Research (2021) https://genome.cshlp.org/content/31/7/1296 for details.
cellSpat
cell communcation tools
ProxSeek
SenePy
senepy is a set of tools to score single-cells based on their expression of cell-specific senescence markers
setupNewUbuntu
TrendCatcher
TrendCatcher is an open source R-package that allows users to systematically analyze and visualize time course data. Please cite "Temporal transcriptomic analysis using TrendCatcher identifies early and persistent neutrophil activation in severe COVID-19" by Xinge Wang et al published in JCI Insight (2022) - https://insight.jci.org/articles/view/157255
TrendCatcherWorkshopBIOC2022
jaleesr's Repositories
jaleesr/BITFAM
BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequencing data. Please see Gao S et al., Genome Research (2021) https://genome.cshlp.org/content/31/7/1296 for details.
jaleesr/TrendCatcher
TrendCatcher is an open source R-package that allows users to systematically analyze and visualize time course data. Please cite "Temporal transcriptomic analysis using TrendCatcher identifies early and persistent neutrophil activation in severe COVID-19" by Xinge Wang et al published in JCI Insight (2022) - https://insight.jci.org/articles/view/157255
jaleesr/SenePy
senepy is a set of tools to score single-cells based on their expression of cell-specific senescence markers
jaleesr/TrendCatcherWorkshopBIOC2022
jaleesr/cellSpat
cell communcation tools
jaleesr/ProxSeek
jaleesr/setupNewUbuntu