jamaliki
PhD student @ Scheres Laboratory, MRC Laboratory of Molecular Biology.
MRC Laboratory of Molecular BiologyCambridge, UK
Pinned Repositories
model-angelo
Automatic atomic model building program for cryo-EM maps
e3nn-jax
jax library for E3 Equivariant Neural Networks
automl
Google Brain AutoML
cryodrgn
Neural networks for cryo-EM reconstruction
CryoREAD
CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.
evals
Evals is a framework for evaluating OpenAI models and an open-source registry of benchmarks.
examples
A set of examples around pytorch in Vision, Text, Reinforcement Learning, etc.
qscore
Q-score in pure Python without requiring Chimera
rust-trie
Python Package With A Trie Implementation in Rust
protein-lm-scaling
jamaliki's Repositories
jamaliki/qscore
Q-score in pure Python without requiring Chimera
jamaliki/automl
Google Brain AutoML
jamaliki/cryodrgn
Neural networks for cryo-EM reconstruction
jamaliki/CryoREAD
CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.
jamaliki/evals
Evals is a framework for evaluating OpenAI models and an open-source registry of benchmarks.
jamaliki/examples
A set of examples around pytorch in Vision, Text, Reinforcement Learning, etc.
jamaliki/flash-attention
Fast and memory-efficient exact attention
jamaliki/hh-suite
Remote protein homology detection suite.
jamaliki/jamaliki.github.io
jamaliki/mlflux
A fork of the MLFlow open source platform for the machine learning lifecycle. Meant to be simplified and (in places) improved.
jamaliki/optimizers
For optimization algorithm research and development.
jamaliki/planet-express
Super minimal trainer class for PyTorch. Designed for distributed data parallel and mixed-precision training.
jamaliki/pytorch
Tensors and Dynamic neural networks in Python with strong GPU acceleration
jamaliki/rust-trie
Python Package With A Trie Implementation in Rust
jamaliki/GPU-Puzzles
Solve puzzles. Learn CUDA.
jamaliki/MolProbity
Protein and nucleic acid validation service
jamaliki/plinder
Protein Ligand INteraction Dataset and Evaluation Resource
jamaliki/progres
Fast protein structure searching or your money back
jamaliki/progres-sinkhorn-metric
Using Progres embeddings to get the distance between two sets of proteins
jamaliki/relion
Image-processing software for cryo-electron microscopy
jamaliki/RFdiffusion
Code for running RFdiffusion