Pinned Repositories
bac_pangenome
Nextflow pipeline for bacterial pangenomics
bacterial_large_indel_detection
This tool allows for the detection of large deletions in haploid organisms such as bacteria.
bacterial_transcriptomics
Cell
django-governance-platform
A Django application to manage tickets for an internal helpdesk. Formerly known as Jutda Helpdesk.
GenGraph
A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
Genome_stats_tools
This is a collection of tools for getting the required information about a genome out of GFF and fasta files
git_lecture
git_lecture_old
A repo containing materials for the lecture on git
h3agwas
GWAS Pipeline for H3Africa
jambler24's Repositories
jambler24/GenGraph
A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
jambler24/bacterial_transcriptomics
jambler24/Genome_stats_tools
This is a collection of tools for getting the required information about a genome out of GFF and fasta files
jambler24/bac_pangenome
Nextflow pipeline for bacterial pangenomics
jambler24/bacterial_large_indel_detection
This tool allows for the detection of large deletions in haploid organisms such as bacteria.
jambler24/Cell
jambler24/django-governance-platform
A Django application to manage tickets for an internal helpdesk. Formerly known as Jutda Helpdesk.
jambler24/git_lecture
jambler24/git_lecture_old
A repo containing materials for the lecture on git
jambler24/h3agwas
GWAS Pipeline for H3Africa
jambler24/Holmes
Repository for the Holmes NGS analysis platform
jambler24/Holmes_Docker
The docker install files for Holmes
jambler24/Holmes_v1
New home for Holmes
jambler24/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
jambler24/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
jambler24/neural_cell
jambler24/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
jambler24/SASBi_Hackathon
jambler24/TEAR
A repository for the Transposable Element Analysis for RIP (TEAR) tool.
jambler24/uct-srst2
MLST using srst2, implemented in Nextflow
jambler24/vcf2fasta
A python tool to convert a vcf file to an aligned fasta file
jambler24/WGS_slides