/dnarichment

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If you have biological parts represented in SBOL and you want to know more about them, you're in the right place.

Depends: fmaseq service Will depend on later: enrichment itself

sbol-enrichment "boils down" the rich information from enrichment/sybiont into concise indications that can be attached to an SBOL design.

apt install hmmer ncbi-blast+

Also need:

  • Pfam-A.hmm.gz from Pfam, pressed with hmmpress.
  • A blast db of TFBSs (run ./makeblastdb.sh in the data directory)