Pinned Repositories
htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
picard
A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.
STAR
RNA-seq aligner
RTutor
Chat with your data via AI. https://RTutor.ai
htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
Drop-seq
Java tools for analyzing Drop-seq data
vireo
Demultiplexing pooled scRNA-seq data with or without genotype reference
DropletUtils
Clone of the Bioconductor repository for the DropletUtils package.
muHVT
Constructing hierarchical Voronoi tessellations for a given data set and overlay heatmaps for variables at various levels of the tessellations for in-depth data analysis. Credits to Mu Sigma for their continuous support throughout the development of the package.
Demultiplexing_Doublet_Detecting_Docs
jamesnemesh's Repositories
jamesnemesh/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
jamesnemesh/picard
A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.