jamesprg
Ph.D in Computational Chemistry working as a Bioinformatics Analyst at Fred Hutchinson Cancer Research Center.
Fred Hutchinson Cancer Research CenterIssaquah, WA
Pinned Repositories
abhisheknaiidu
👀
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Batch-Simulation-With-Varied-Composition
Creating repository for uploading work which automates the creation of various molecular dynamics using packmol to initialize and proceeds to create gromacs ready files
celda
Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
dropsim
R Package for Single Cell RNAseq Synthetic Data Simulation
GitHub_workflow
This repository is created to be used in github_workflow workshop.
knn-smoothing
K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data
n_alchohol_MARTINI
Analysis scripts, notebooks, and example files for MD simulations using the MARTINI force fields to study n-alcohols in model membranes
scRNA-seq
Introduction to single-cell RNA-seq analysis
pbut_tica-msm
tICA used to build MSMs for the study of protein bound uremic toxins
jamesprg's Repositories
jamesprg/abhisheknaiidu
👀
jamesprg/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
jamesprg/Batch-Simulation-With-Varied-Composition
Creating repository for uploading work which automates the creation of various molecular dynamics using packmol to initialize and proceeds to create gromacs ready files
jamesprg/celda
Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
jamesprg/dropsim
R Package for Single Cell RNAseq Synthetic Data Simulation
jamesprg/GitHub_workflow
This repository is created to be used in github_workflow workshop.
jamesprg/knn-smoothing
K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data
jamesprg/n_alchohol_MARTINI
Analysis scripts, notebooks, and example files for MD simulations using the MARTINI force fields to study n-alcohols in model membranes
jamesprg/scRNA-seq
Introduction to single-cell RNA-seq analysis
jamesprg/hiv-founder-id
Estimate founders of HIV-1 infection using nucleotide sequences from very acute infection
jamesprg/jamesprg
jamesprg/Machine-Learn-ing
Space for materials used during learning/researching machine learning methods
jamesprg/mdanalysis
MDAnalysis is a Python library to analyze molecular dynamics trajectories.
jamesprg/mopig
Profile for https://github.com/mopig
jamesprg/protigy
Proteomics Toolset for Integrative Data Analysis
jamesprg/Python_SQL
A notebook working with Python and MySQL, using MySQL Connector.
jamesprg/SQL-Adventures
A repository for the different courses I have taken/am working on regarding SQL and queries I am writing for my own learning/projects
jamesprg/Thaiane
jamesprg/tw93
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