jamesrco
Marine biogeochemical scientist at the Environmental Defense Fund. Interests: Oceanography, biogeochemistry, carbon dioxide removal, natural climate solutions.
Environmental Defense FundBend, OR
Pinned Repositories
bottle-mysteries
Investigations into weird stuff that goes on during bottle incubations
DO_Instruments
Code for manipulation and analysis of data from PHORCYS and AutoBOD
forester
forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
GeoSciData_IO
Various scripts for data input/output and data massaging, mostly useful for earth scientists (and maybe biologists)
global-trawling-CO2
A more reasonable estimate of CO2 emissions from benthic trawling
LipidPhotoOxBox
Data and code for Collins et al., "The molecular products and biogeochemical significance of lipid photooxidation in West Antarctic surface waters"
LOBSTAHS
Git repository for the R package "LOBSTAHS" (Lipid and Oxylipin Biomarker Screening Through Adduct Hierarchy Sequences)
PacNWSpills
Analysis of spill & release data from Oregon and Washington
PEAR
Pair-End AssembeR
zoonotic-C
Exploring zoonotic carbon fluxes in the ocean
jamesrco's Repositories
jamesrco/global-trawling-CO2
A more reasonable estimate of CO2 emissions from benthic trawling
jamesrco/zoonotic-C
Exploring zoonotic carbon fluxes in the ocean
jamesrco/forester
forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
jamesrco/LipidPhotoOxBox
Data and code for Collins et al., "The molecular products and biogeochemical significance of lipid photooxidation in West Antarctic surface waters"
jamesrco/PacNWSpills
Analysis of spill & release data from Oregon and Washington
jamesrco/SpiecEasi
Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
jamesrco/bottle-mysteries
Investigations into weird stuff that goes on during bottle incubations
jamesrco/DO_Instruments
Code for manipulation and analysis of data from PHORCYS and AutoBOD
jamesrco/LOBSTAHS
Git repository for the R package "LOBSTAHS" (Lipid and Oxylipin Biomarker Screening Through Adduct Hierarchy Sequences)
jamesrco/3H_Leu_BactProd
Suite of scripts for evaluating, calculating, and plotting rates of marine bacterial production using liquid scintillation counter data from the 3H-leucine microcentrifuge method
jamesrco/airspace-jekyll
A port of the Airspace theme by ThemeFisher to Jekyll.
jamesrco/armbrustlab.github.io
jamesrco/dependencies-useful-scripts
Dependencies for code in other repos, and some generally useful scripts.
jamesrco/DielALOHA
Analysis of various data from the 2015-2016 diel cycle experiments at Station ALOHA
jamesrco/drawio-github
Drawio GitHub Integration
jamesrco/Example_Untargeted_Metabolomics_Workflow
Setup for untargeted metabolomics
jamesrco/ExoenzymeHydroCalc
Interactively calculate rates of bacterial exoenzyme hydrolysis using fluoresence data from incubations with fluorogenic substrates
jamesrco/glosario
A multilingual glossary package.
jamesrco/LATEX_thesis
LATEX code & dependencies for production of my dissertation
jamesrco/LipidomicsDataViz
Scripts for data processing, visualization, and statistical analysis of lipidomics data
jamesrco/MetabolomicsTools
jamesrco/mstoo
xcms-compatible tools for handling & manipulation of fragmentation spectra
jamesrco/MultipleFatesofParticles
Code and data files for 2015 GBC paper on North Atlantic particle flux; also used in Laber et al. 2018 Nat. Micro. paper
jamesrco/NWPac_amplicon
Workup of 16S/18S data from three cruises in the NW Pacific
jamesrco/ocean-conservation-priorities
Repository for all the code associated with the paper "Reconciling biodiversity protection, food production, and climate change mitigation in the global ocean" from Sala et al, 2020
jamesrco/opedia
jamesrco/Optics_Photochem
Read in, parse, analyze marine optical and photochemical data
jamesrco/seaweed
Evaluating the potential for seaweed aquaculture to sequester carbon and mitigate climate change
jamesrco/SmartThings
Samsung SmartThings SmartApps and Device Handlers
jamesrco/solutions
The mission of Project Drawdown is to help the world reach “Drawdown”— the point in the future when levels of greenhouse gases in the atmosphere stop climbing and start to steadily decline, thereby stopping catastrophic climate change — as quickly, safely, and equitably as possible.