jamestwebber
Computational Scientist in the Methods Development Lab
Broad InstituteSomerville, MA, USA
Pinned Repositories
blagotube
This is the Lektor source for my personal website (http://ja.meswebber.com). Including my potentially-useful adaptation of Glasseye (Markdown + Tufte CSS + d3).
bootcamp-programming
The in-class programming project for QBC Bootcamp
pandemic-statistician
An online assistant for Pandemic Legacy
revealed3-blank
A blank template for a reveal.js presentation with d3 support, plus some useful scripts.
UCSF-thesis-template
zotero2slack
Small tool for monitoring a Zotero JSON feed and posting new articles to Slack
jamestwebber's Repositories
jamestwebber/blagotube
This is the Lektor source for my personal website (http://ja.meswebber.com). Including my potentially-useful adaptation of Glasseye (Markdown + Tufte CSS + d3).
jamestwebber/dask-pynndescent
A fork of pynndescent for developing a Dask-enabled version.
jamestwebber/revealed3-blank
A blank template for a reveal.js presentation with d3 support, plus some useful scripts.
jamestwebber/bagels
Andy's bagel recipe
jamestwebber/black-feedstock
A conda-smithy repository for black.
jamestwebber/CellBender
CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
jamestwebber/cpython
The Python programming language
jamestwebber/dask-labextension
JupyterLab extension for Dask
jamestwebber/dask-ml
Scalable Machine Learning with Dask
jamestwebber/delete-tweets
Delete tweets from your timeline.
jamestwebber/Flake8-pyproject
Flake8 plug-in loading the configuration from pyproject.toml
jamestwebber/igv-notebook
Module for embedding igv.js in an IPython notebook
jamestwebber/ingest-validation-tools
HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.
jamestwebber/IsoQuant
Reference-based transcript discovery from long RNA read
jamestwebber/jamestwebber.github.io
Personal website, barebones edition.
jamestwebber/jax
Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more
jamestwebber/jupyter-scatter
Interactive 2D scatter plot widget for Jupyter Lab and Notebook. Scales to millions of points!
jamestwebber/license-expression
Utility library to parse, normalize and compare License expressions for Python using a boolean logic engine. For expressions using SPDX or any other license id scheme.
jamestwebber/micromamba-docker
Rapid builds of small Conda-based containers using micromamba.
jamestwebber/noodles
Bioinformatics I/O libraries in Rust
jamestwebber/numcodecs
A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.
jamestwebber/pyro
Deep universal probabilistic programming with Python and PyTorch
jamestwebber/pyro-ppl-feedstock
A conda-smithy repository for pyro-ppl.
jamestwebber/pytorch
Tensors and Dynamic neural networks in Python with strong GPU acceleration
jamestwebber/read_until_api
Read Until client library for Nanopore Sequencing
jamestwebber/RustPython
A Python Interpreter written in Rust
jamestwebber/simscity
A library to simulate single-cell data
jamestwebber/sparse
Sparse multi-dimensional arrays for the PyData ecosystem
jamestwebber/tama
Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
jamestwebber/torchegranate
A temporary repository hosting a pomegranate re-write using PyTorch as the backend.