janelia-flyem

Pinned Repositories

buildem
CMake and other scripts to help build process of FlyEM software
Language:CMake27 14 916
ConnectomeHackathon2016
DVID Ecosystem, Big Data Infrastructure, and Deployment for EM Connectomics
7 8 02
diced
Interface that allows versioned access to cloud-backed nD datasets.
Language:Python9 8 94
dvid
Distributed, Versioned, Image-oriented Dataservice
Language:Go199 18 31733
DVIDSparkServices
Spark implemented EM reconstruction software workflows
Language:Python8 10 31
gala
Automatic segmentation of electron microscopy volumes
Language:Python76 11 3230
neuclease
Tools for computing interactive "cleaves" of agglomerated neuron fragments from a DVID server.
Language:Jupyter Notebook9 7 165
NeuroProof
Tool for graph-based image segmentation and analysis
Language:C++21 11 59
neuroproof_examples
Example data and commands for exploring NeuroProof
9 9 07
NeuTu
Software package for neuron reconstruction and visualization
Language:C++38 15 22613

janelia-flyem's Repositories

janelia-flyem/dvid
Distributed, Versioned, Image-oriented Dataservice
Language:Go199 18 31733
janelia-flyem/NeuTu
Software package for neuron reconstruction and visualization
Language:C++38 15 22613
janelia-flyem/buildem
CMake and other scripts to help build process of FlyEM software
Language:CMake27 14 916
janelia-flyem/neuclease
Tools for computing interactive "cleaves" of agglomerated neuron fragments from a DVID server.
Language:Jupyter Notebook9 7 165
janelia-flyem/vol2mesh
A mesh generating wrapper in Python 3
Language:Python7 7 25
janelia-flyem/libdvid-cpp
C++ library for accessing DVID's REST API
Language:HTML6 11 367
janelia-flyem/dvid-console
Web console and API help for DVID
Language:JavaScript3 10 501
janelia-flyem/echo-secure
Go library that uses Google oAuth2 authentication and custom authorization for the echo framework.
Language:Go3 7 02
janelia-flyem/go
Snapshotted, mirrored libraries of useful go packages.
Language:Go2 9 02
janelia-flyem/dvid-resource-manager
Manages large-scale batch requests to DVID.
Language:Python1 8 6
janelia-flyem/dvidjs
Javascript API to Access a DVID server
Language:JavaScript1 11 1
janelia-flyem/flyem-snapshot
Connectome exports and reports
Language:Python1
janelia-flyem/flyem-views
A git repo to preserve the history of gs://flyem-views
1 7 0
janelia-flyem/flyemflows
Language:Python1 2 02
janelia-flyem/ingestion-guide-aso-mb-4nm
A guide to ingesting new volumes into DVID, using the Aso MB 4nm as an example.
Language:Python1 3 0
janelia-flyem/lowtis
Low Latency Image Service
Language:C++1 7 44
janelia-flyem/assignment-manager
Assignment manager database and applications
Language:JavaScript0 3 00
janelia-flyem/flyem-recon-qc
Quality control scripts used in EM reconstruction
Language:Python0 7 00
janelia-flyem/neuPrint-Build-Update
Collection of scripts to build and update the neuPrint neo4j database
Language:Python0 7 00
janelia-flyem/appdata-store
HTTP cloud function interface to the Google Datastore to manage application state.
Language:Python8 0
janelia-flyem/dvid-io
DVID documentation website
Language:JavaScript7 0
janelia-flyem/dvidutils
A collection of utility functions for dealing with dvid data
Language:C++2 22
janelia-flyem/flyem-build-container
Docker container for building FlyEM conda packages
Language:Dockerfile8 0
janelia-flyem/flyem-conda-recipes
Conda recipes for building FlyEM's software stack
Language:Shell8 0
janelia-flyem/flyem-shortener
link shortener for neuroglancer
Language:Python
janelia-flyem/gcs-proxy
Simple reverse proxy that modifies Access-Control-Allow-Origin due to GCS bug
Language:Dockerfile
janelia-flyem/imgsearch_sig
Fast image search functions using signatures.
Language:Python9 0
janelia-flyem/mad-responder
Flask-based responder for the MAD database
Language:JavaScript7 9
janelia-flyem/neutu_user_doc
Versioned user documentation for NeuTu/Neu3
9 01
janelia-flyem/tensorstore-dvid-api
A Python-based FastAPI service that provides HTTP API support for selected DVID endpoints, using TensorStore as the backend data source.
Language:Python