japhir
Postdoc Researcher at SOEST | University of Hawaii at Mānoa
Research Corporation of the University of HawaiiHonolulu
Pinned Repositories
clumpedr
Clumped isotope data analysis in R
2020-02_paleontology
A quick introduction to R so that students of the Utrecht University Paleontology—fauna course can try exercise 8 in R
ArchConfigs
configuration files for my Arch Linux machine
clumpedcalib
Calculate and Apply Clumped Isotope Calibrations Using Bootstrapping
colourlog
generate plots of colourlogs from core photographs
corepics
Plot IODP core photographs in R with ggplot2 and ggtextures
GeologicTimeScale
Read in the GTS as a csv, then use ggplot2 in R to make a timescale. Use patchwork to add it to your figures.
snvecR
Calculate Earth’s Obliquity and Precession in the Past
stdstats
Simulation and plotting code for "Optimizing the use of carbonate standards to minimize uncertainties in clumped isotope data"
stratPlot
An R-function that makes plotting geological depth/age data easy
japhir's Repositories
japhir/ArchConfigs
configuration files for my Arch Linux machine
japhir/snvecR
Calculate Earth’s Obliquity and Precession in the Past
japhir/GeologicTimeScale
Read in the GTS as a csv, then use ggplot2 in R to make a timescale. Use patchwork to add it to your figures.
japhir/stdstats
Simulation and plotting code for "Optimizing the use of carbonate standards to minimize uncertainties in clumped isotope data"
japhir/colourlog
generate plots of colourlogs from core photographs
japhir/cp-2018-42
Scripts and data used in "The 405 kyr and 2.4 Myr eccentricity components in Cenozoic carbon isotope records"
japhir/rpackagesetup
Create a new R package from scratch using usethis
japhir/clumpedcalib
Calculate and Apply Clumped Isotope Calibrations Using Bootstrapping
japhir/stdsim
Simulating Clumped Isotope standard statistics
japhir/Aragonite_clumped
Repo containing all the R code to do the data processing and create figures as descibed in the accompanying paper on the clumped isotope composition of lab-grown aragonitic Arctica islandica shells
japhir/cmocean-1
Colormap setup for standardizing commonly-plotting oceanographic variables.
japhir/crafted-emacs
A sensible base Emacs configuration.
japhir/crafter-configs
A listing of configurations by System Crafters community members!
japhir/D47crunch
Python library for processing and standardizing carbonate clumped-isotope analyses, from low-level data out of a dual-inlet mass spectrometer to final, “absolute” Δ47 and Δ48 values with fully propagated analytical error estimates.
japhir/dataviz
A book covering the fundamentals of data visualization
japhir/DnD_mobs
Simulate many dice-rolls for D&D 5e mobs
japhir/geosurvey
analyze survey results
japhir/hledger
Robust, fast, intuitive plain text accounting tool with CLI, TUI and web interfaces.
japhir/isogeochem
The isogeochem R package aims to make working with stable oxygen, carbon, and clumped isotope data reproducible and straightforward.
japhir/japhir
Config files for my GitHub profile.
japhir/knitr_case_studies
Inference case studies in knitr
japhir/masspec-syncscript
japhir/mu
maildir indexer/searcher + emacs mail client + guile bindings
japhir/oceanexplorer
This package enables easy exploration of the NOAA WORLD OCEAN ATLAS
japhir/org-appear
Toggle visibility of hidden Org mode element parts upon entering and leaving an element
japhir/org-roam
Rudimentary Roam replica with Org-mode
japhir/r-pkgs
Building R packages
japhir/rethinking2
japhir/RGDGT
R code to evaluate isoprenoidal and branched Glycerol Dialkyl Glycerol Tetraethers for paleotemperature and paleoenvironmental reconstructions
japhir/visualise-orbitN
Visualise solar system simulation output from orbitN in Blender