Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
bioinformatics.software.packaging.solutions
This is the GitHub repository for our recent study "Packaging and containerizing of bioinformatics software: advances, challenges, and opportunities" Please follow to the repository's wiki for more information and details on how this repository is connected to the paper.
CMash
Fast and accurate set similarity estimation via containment min hash
COVID19byZip
data_reusability
reusability
star-join-bitmap
star-join-spark
Two efficient algorithms to process Star Joins using the Spark framework: Spark Bloom-Filtered Cascade Join (SBFCJ) and the Spark Broadcast Join (SBJ)
telescope
Telescope server repository
jaquejbrito's Repositories
jaquejbrito/star-join-spark
Two efficient algorithms to process Star Joins using the Spark framework: Spark Bloom-Filtered Cascade Join (SBFCJ) and the Spark Broadcast Join (SBJ)
jaquejbrito/star-join-bitmap
jaquejbrito/bioconda-recipes
Conda recipes for the bioconda channel.
jaquejbrito/bioinformatics.software.packaging.solutions
This is the GitHub repository for our recent study "Packaging and containerizing of bioinformatics software: advances, challenges, and opportunities" Please follow to the repository's wiki for more information and details on how this repository is connected to the paper.
jaquejbrito/CMash
Fast and accurate set similarity estimation via containment min hash
jaquejbrito/COVID19byZip
jaquejbrito/data_reusability
reusability
jaquejbrito/enhancing_reproducibility
jaquejbrito/ENose-Decorr_Humdt_Temp
jaquejbrito/error.correction.benchmarking
new EC
jaquejbrito/fasta-to-fastq
Automatically exported from code.google.com/p/fasta-to-fastq
jaquejbrito/ggmModel
jaquejbrito/good.software
This is the GitHub repository for our recent study "A comprehensive analysis of the usability and archival stability of omics computational tools and resources." Please follow to the repository's wiki for more information and details on how this repository is connected to the paper.
jaquejbrito/hbase
Mirror of Apache HBase
jaquejbrito/imrep
ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
jaquejbrito/jaquejbrito.github.io
My personal website
jaquejbrito/matplotlib
matplotlib: plotting with Python
jaquejbrito/meta-review
Manuscript describing open collaborative writing with Manubot
jaquejbrito/my_manuscript
jaquejbrito/pkg-manager-review
Manubot Repo for Package Manager Review Paper
jaquejbrito/presentations
repository for various presentations by members of Mangul lab at USC
jaquejbrito/RandomPy
Random python scripts that may serve as real life examples.
jaquejbrito/rootstock
Clone me to create your Manubot manuscript
jaquejbrito/sbt
jaquejbrito/SBT_publication
SBT_publication
jaquejbrito/sbt_tool
jaquejbrito/seeing.beyond.target.results
results for running SBT on TCGA and OP datasets
jaquejbrito/segmentacao
jaquejbrito/suffix_tree
This is a conversion for Python 3 of the python module suffix_tree v2.1, python bindings for a C implementation of Generalized Suffix Trees. http://www.daimi.au.dk/~mailund/suffix_tree.html
jaquejbrito/test_pr