jaquol
Bioinformatician at Clarivate Analytics. Data science applied to genomics. Like stats of daily life & freakonomics
CRGBarcelona
Pinned Repositories
2017-01-26_world_cloud_crg_postdoc_retreat
2017-06-19_ucsc_genome_browser_track_hub_negate_values
2017-07-14_differential_expression_analysis_trapnell
Differential expression analysis using Kallisto and Sleuth
blog-like-old
A place to share how I solved questions that I could not quickly find in Google and/or took me some time to figure out.
cgat
CGAT - Computational Genomics Analysis Tools
dryhic_paper
FASTQC
Bash scripts and Ipython notebook for running the FASTQC program over multiple samples and analyze its quality control reports
Minerva-Mount-Sinai
I started...
Plotting
Python scripts (mostly) to generate plots using genomic data
jaquol's Repositories
jaquol/blog-like-old
A place to share how I solved questions that I could not quickly find in Google and/or took me some time to figure out.
jaquol/cgat
CGAT - Computational Genomics Analysis Tools
jaquol/Minerva-Mount-Sinai
I started...
jaquol/Plotting
Python scripts (mostly) to generate plots using genomic data
jaquol/2017-01-26_world_cloud_crg_postdoc_retreat
jaquol/2017-06-19_ucsc_genome_browser_track_hub_negate_values
jaquol/2017-07-14_differential_expression_analysis_trapnell
Differential expression analysis using Kallisto and Sleuth
jaquol/dryhic_paper
jaquol/FASTQC
Bash scripts and Ipython notebook for running the FASTQC program over multiple samples and analyze its quality control reports
jaquol/jaquol.github.io
Build a Jekyll blog in minutes, without touching the command line.
jaquol/mostly-bioinformatics
jaquol/Scripts
Ptyhon and bash scripts
jaquol/svtyper
Bayesian genotyper for structural variants
jaquol/tadbit
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
jaquol/test
jaquol/understanding_bedtools_reldist