Pinned Repositories
gwas
Some useful code for GWAS
jaredo's Repositories
jaredo/gwas
Some useful code for GWAS
jaredo/akt
Ancestry and Kinship Tools
jaredo/bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
jaredo/bcftools-plugins
some random bcftools plugins
jaredo/bravo
BRowse All Variants Online
jaredo/docker-alignment
Dockerfile for Alignment
jaredo/duohmm
A post-hoc pedigree phasing routine for use with SHAPEIT2
jaredo/Eagle
Haplotype phasing software
jaredo/gatk4-GenotypeGVCFs-nf
Joint calling of gVCF, following GATK4 Best Practices
jaredo/googletest
Google Test
jaredo/gvcfgenotyper
A utility for merging and genotyping Illumina-style GVCFs.
jaredo/hap.py
Haplotype VCF comparison tools
jaredo/jaredo.github.io
Personal web page
jaredo/jeigen
Java wrapper for Eigen C++ fast matrix library
jaredo/NxTrim
Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.
jaredo/Pipeline-Standardization
jaredo/plink-ng
A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Future development will revolve around critical extensions to the core file format (multiallelic variants, dosage, phase).
jaredo/prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
jaredo/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
jaredo/shapeit4
Segmented HAPlotype Estimation and Imputation Tool
jaredo/snptools
Automatically exported from code.google.com/p/snptools
jaredo/test
test repository
jaredo/thesis
DPhil thesis