jasenfinch
Postdoctoral Research Fellow in Acute Oak Decline. Applying metabolomics to tree health.
Aberystwyth UniversityAberystwyth
Pinned Repositories
binneR
An R package for spectral binning of FIE-HRMS metabolomic fingerprinting data
mzAnnotation
An R package containing tools for putative annotation of accurate m/z from electrospray ionisation mass spectrometry data.
cheminf
Chemoinformatics tools for annotating untargeted ESI-MS metabolomics data
composition
Compositional analyses for metabolomics data
grover
Web API Framework for Mass Spectrometry Data Transfer
hrm
Easily install, load and update R packages for high-resolution metabolomics analyses
hrm-docker
Docker containers for high resolution metabolomics analyses in R
metabolyseR
Methods for pre-treatment, modelling/data mining, and correlation analyses of metabolomics data
pdi
Phenotypic index measures for oak decline severity
Spectral_binning_as_an_approach_to_post-acquisition_processing_of_FIE-HRMS_data
Spectral binning as an approach to post-acquisition processing of high resolution FIE-HRMS metabolome fingerprinting data
jasenfinch's Repositories
jasenfinch/metabolyseR
Methods for pre-treatment, modelling/data mining, and correlation analyses of metabolomics data
jasenfinch/grover
Web API Framework for Mass Spectrometry Data Transfer
jasenfinch/Spectral_binning_as_an_approach_to_post-acquisition_processing_of_FIE-HRMS_data
Spectral binning as an approach to post-acquisition processing of high resolution FIE-HRMS metabolome fingerprinting data
jasenfinch/cheminf
Chemoinformatics tools for annotating untargeted ESI-MS metabolomics data
jasenfinch/composition
Compositional analyses for metabolomics data
jasenfinch/hrm
Easily install, load and update R packages for high-resolution metabolomics analyses
jasenfinch/hrm-docker
Docker containers for high resolution metabolomics analyses in R
jasenfinch/hrmtargets
Targets for high resolution metabolomics workflows
jasenfinch/metaboMisc
Miscellaneous helper and linker functions for metabolomics analyses
jasenfinch/metaboReports
Automated report generation for high resolution metabolomics analyses
jasenfinch/metaboWorkflows
Workflow Project Templates for Metabolomics Analyses
jasenfinch/pretreatment
Data pre-treatment methods for metabolomics analyses
jasenfinch/projecttemplates
R project templates for reproducible research and analyses
jasenfinch/BiocParallel.FutureParam
:rocket: R package: BiocParallel.FutureParam - Use Futures with BiocParallel
jasenfinch/pdi
Phenotypic index measures for oak decline severity
jasenfinch/chunky
Programmatic R Markdown code chunk generation
jasenfinch/construction
Consensus structural classifications for putative molecular formula assignments
jasenfinch/Data_driven_matrix-wide_molecular_formula_assignment_for_high_resolution_ESI-MS
Data driven, matrix-wide molecular formula assignment for high resolution ESI-MS
jasenfinch/erah
eRah development version. For downloads, please use CRAN
jasenfinch/jfmisc
Miscellaneous R functions
jasenfinch/jftargets
A collection of utility functions for use with targets pipelines
jasenfinch/missForest
missForest is a nonparametric, mixed-type imputation method for basically any type of data for the statistical software R.
jasenfinch/piggyback
:package: for using large(r) data files on GitHub
jasenfinch/profilePro
Unified input and output for processing of metabolomic profiling experiments
jasenfinch/renv
renv: Project environments for R.
jasenfinch/riches
Functional and structural enrichment for metabolomic analyses
jasenfinch/schedule
A simple task scheduling/queuing tool in R
jasenfinch/sRm
Toolkit for Selective Reaction Monitoring (SRM) Mass Spectrometry (MS) Data
jasenfinch/TreeTalkersCheck
An alert system to daily monitoring of TreeTalkers devices
jasenfinch/ttalkR
ttalkR: a unified pre-processing of TreeTalker data