backends/
: Backend configuration files (.conf
)workflow_opts/
: Workflow option files (.json
)examples/
: input JSON examples (SE and PE)data/
: data TSV files for each platformsrc/
: scripts for each task in WDLdocker/
: Dockerfilestest/
: test scripts for developers
Use the paired-end data from here:
https://galaxytrakr.org/u/jpayne/h/big-olaf
{
"paired_reads":[
{"left":"SRR20708232/forward.fastqsanger.gz", "right":"SRR20708232/reverse.fastqsanger.gz"},
{"left":"SRR20708233/forward.fastqsanger.gz", "right":"SRR20708233/reverse.fastqsanger.gz"},
{"left":"SRR20708234/forward.fastqsanger.gz", "right":"SRR20708234/reverse.fastqsanger.gz"},
{"left":"SRR20708235/forward.fastqsanger.gz", "right":"SRR20708235/reverse.fastqsanger.gz"},
{"left":"SRR20708236/forward.fastqsanger.gz", "right":"SRR20708236/reverse.fastqsanger.gz"},
{"left":"SRR20708237/forward.fastqsanger.gz", "right":"SRR20708237/reverse.fastqsanger.gz"}
]
}