Pinned Repositories
analysis-workflows
Pilot test for using the Arvados system to create new MGI cancer pipelines.
bfx_workshop
cancer-genomics-workflow-wiki
A full featured, including pull requests, git repo for the arvados_trial Wiki
common-workflow-language
Repository for CWL Specifications. Use https://www.biostars.org/t/cwl/ for support.
cse427s
docker-cle
Docker containerization for the CLE
docker-dna-alignment
A fat docker image for running alignment
docker-fgbio
A docker image for using fgbio
docker-haloplex_demux
Docker container for demultiplexing haloplex data, thanks to ED and HA
docker-interval_list_tools-cwl
A Docker image for Picard IntervalListTools with helper scripts.
jasonwalker80's Repositories
jasonwalker80/analysis-workflows
Pilot test for using the Arvados system to create new MGI cancer pipelines.
jasonwalker80/bfx_workshop
jasonwalker80/cancer-genomics-workflow-wiki
A full featured, including pull requests, git repo for the arvados_trial Wiki
jasonwalker80/common-workflow-language
Repository for CWL Specifications. Use https://www.biostars.org/t/cwl/ for support.
jasonwalker80/cse427s
jasonwalker80/docker-cle
Docker containerization for the CLE
jasonwalker80/docker-dna-alignment
A fat docker image for running alignment
jasonwalker80/docker-fgbio
A docker image for using fgbio
jasonwalker80/docker-haloplex_demux
Docker container for demultiplexing haloplex data, thanks to ED and HA
jasonwalker80/docker-interval_list_tools-cwl
A Docker image for Picard IntervalListTools with helper scripts.
jasonwalker80/dockstore-workflow-index-reference
A dockstore compatible workflow repository for indexing a reference genome sequence.
jasonwalker80/dotfiles
jasonwalker80/fpfilter-tool
jasonwalker80/genome
Core modules used by the GMS
jasonwalker80/genome-db-ucsc-data
Unofficial repo for software vendoring or packaging purposes
jasonwalker80/gvanno
Docker-based annotation pipeline for human germline variants
jasonwalker80/palantir-workflows
Utility workflows for the DSP hydro.gen team (formerly palantir)
jasonwalker80/pVAC-Seq
A cancer immunotherapy pipeline
jasonwalker80/qc-analysis-pipeline
Workflow used for WGS data QC
jasonwalker80/rnabio.org
website for the rnaseq course
jasonwalker80/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
jasonwalker80/rnaseq_tutorial_wiki
The wiki repo, with pull request enabled, for the rnaseq_tutorial
jasonwalker80/t81_558_deep_learning
Washington University (in St. Louis) Course T81-558: Applications of Deep Neural Networks
jasonwalker80/t81_558_sp18_kaggle
Kaggle Competition for Spring '18 T81 558 - Deep Neural Networks
jasonwalker80/wu-comp-bio-test